Literature DB >> 17040982

pK(a) values for side-chain carboxyl groups of a PGB1 variant explain salt and pH-dependent stability.

Stina Lindman1, Sara Linse, Frans A A Mulder, Ingemar André.   

Abstract

Determination of pK(a) values of titrating residues in proteins provides a direct means of studying electrostatic coupling as well as pH-dependent stability. The B1 domain of protein G provides an excellent model system for such investigations. In this work, we analyze the observed pK(a) values of all carboxyl groups in a variant of PGB1 (T2Q, N8D, N37D) at low and high ionic strength as determined using (1)H-(13)C heteronuclear NMR in a structural context. The pK(a) values are used to calculate the pH-dependent stability in low and high salt and to investigate electrostatic coupling in the system. The observed pK(a) values can explain the pH dependence of protein stability but require pK(a) shifts relative to model values in the unfolded state, consistent with persistent residual structure in the denatured state. In particular, we find that most of the deviations from the expected random coil values can be explained by a significantly upshifted pK(a) value. We show also that (13)C backbone carbonyl data can be used to study electrostatic coupling in proteins and provide specific information on hydrogen bonding and electrostatic potential at nontitrating sites.

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Year:  2006        PMID: 17040982      PMCID: PMC1697841          DOI: 10.1529/biophysj.106.088682

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  38 in total

1.  Realistic modeling of the denatured states of proteins allows accurate calculations of the pH dependence of protein stability.

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2.  A Gaussian-chain model for treating residual charge-charge interactions in the unfolded state of proteins.

Authors:  Huan-Xiang Zhou
Journal:  Proc Natl Acad Sci U S A       Date:  2002-03-12       Impact factor: 11.205

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Journal:  Biochemistry       Date:  2002-05-21       Impact factor: 3.162

4.  Distance dependence and salt sensitivity of pairwise, coulombic interactions in a protein.

Authors:  Kelly K Lee; Carolyn A Fitch; Bertrand García-Moreno E
Journal:  Protein Sci       Date:  2002-05       Impact factor: 6.725

5.  Residual charge interactions in unfolded staphylococcal nuclease can be explained by the Gaussian-chain model.

Authors:  Huan-Xiang Zhou
Journal:  Biophys J       Date:  2002-12       Impact factor: 4.033

6.  Determination of pK(a) values of carboxyl groups in the N-terminal domain of rat CD2: anomalous pK(a) of a glutamate on the ligand-binding surface.

Authors:  H A Chen; M Pfuhl; M S McAlister; P C Driscoll
Journal:  Biochemistry       Date:  2000-06-13       Impact factor: 3.162

7.  Measurement of side-chain carboxyl pK(a) values of glutamate and aspartate residues in an unfolded protein by multinuclear NMR spectroscopy.

Authors:  Martin Tollinger; Julie D Forman-Kay; Lewis E Kay
Journal:  J Am Chem Soc       Date:  2002-05-22       Impact factor: 15.419

8.  Salt effects on ionization equilibria of histidines in myoglobin.

Authors:  Y H Kao; C A Fitch; S Bhattacharya; C J Sarkisian; J T Lecomte; B García-Moreno E
Journal:  Biophys J       Date:  2000-09       Impact factor: 4.033

9.  Electrostatic effects in highly charged proteins: salt sensitivity of pKa values of histidines in staphylococcal nuclease.

Authors:  Kelly K Lee; Carolyn A Fitch; Juliette T J Lecomte; Bertrand García-Moreno E
Journal:  Biochemistry       Date:  2002-04-30       Impact factor: 3.162

10.  THEMATICS: a simple computational predictor of enzyme function from structure.

Authors:  M J Ondrechen; J G Clifton; D Ringe
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  19 in total

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Journal:  J Am Chem Soc       Date:  2011-12-27       Impact factor: 15.419

2.  Highly perturbed pKa values in the unfolded state of hen egg white lysozyme.

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Journal:  Biophys J       Date:  2012-04-03       Impact factor: 4.033

3.  Uncovering specific electrostatic interactions in the denatured states of proteins.

Authors:  Jana K Shen
Journal:  Biophys J       Date:  2010-08-04       Impact factor: 4.033

4.  On the pH-optimum of activity and stability of proteins.

Authors:  Kemper Talley; Emil Alexov
Journal:  Proteins       Date:  2010-09

5.  pK(a) values for the unfolded state under native conditions explain the pH-dependent stability of PGB1.

Authors:  Stina Lindman; Mikael C Bauer; Mikael Lund; Carl Diehl; Frans A A Mulder; Mikael Akke; Sara Linse
Journal:  Biophys J       Date:  2010-11-17       Impact factor: 4.033

6.  Electrostatic interactions in the denatured state ensemble: their effect upon protein folding and protein stability.

Authors:  Jae-Hyun Cho; Satoshi Sato; Jia-Cherng Horng; Burcu Anil; Daniel P Raleigh
Journal:  Arch Biochem Biophys       Date:  2007-08-22       Impact factor: 4.013

7.  Carboxyl pK(a) values, ion pairs, hydrogen bonding, and the pH-dependence of folding the hyperthermophile proteins Sac7d and Sso7d.

Authors:  Andrew T Clark; Kelley Smith; Ranjith Muhandiram; Stephen P Edmondson; John W Shriver
Journal:  J Mol Biol       Date:  2007-07-10       Impact factor: 5.469

8.  Forced gating motions by a substituted titratable side chain at the bundle crossing of a potassium channel.

Authors:  Anu Khurana; Evan S Shao; Robin Y Kim; Yury Y Vilin; Xinyang Huang; Runying Yang; Harley T Kurata
Journal:  J Biol Chem       Date:  2011-08-30       Impact factor: 5.157

9.  Active-Site pKa Determination for Photoactive Yellow Protein Rationalizes Slow Ground-State Recovery.

Authors:  Nur Alia Oktaviani; Trijntje J Pool; Yuichi Yoshimura; Hironari Kamikubo; Ruud M Scheek; Mikio Kataoka; Frans A A Mulder
Journal:  Biophys J       Date:  2017-05-23       Impact factor: 4.033

10.  Protein GB1 folding and assembly from structural elements.

Authors:  Mikael C Bauer; Wei-Feng Xue; Sara Linse
Journal:  Int J Mol Sci       Date:  2009-04-08       Impact factor: 6.208

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