Literature DB >> 20541999

Molecular interplay of the noncoding RNA ANRIL and methylated histone H3 lysine 27 by polycomb CBX7 in transcriptional silencing of INK4a.

Kyoko L Yap1, Side Li, Ana M Muñoz-Cabello, Selina Raguz, Lei Zeng, Shiraz Mujtaba, Jesús Gil, Martin J Walsh, Ming-Ming Zhou.   

Abstract

Expression of the INK4b/ARF/INK4a tumor suppressor locus in normal and cancerous cell growth is controlled by methylation of histone H3 at lysine 27 (H3K27me) as directed by the Polycomb group proteins. The antisense noncoding RNA ANRIL of the INK4b/ARF/INK4a locus is also important for expression of the protein-coding genes in cis, but its mechanism has remained elusive. Here we report that chromobox 7 (CBX7) within the polycomb repressive complex 1 binds to ANRIL, and both CBX7 and ANRIL are found at elevated levels in prostate cancer tissues. In concert with H3K27me recognition, binding to RNA contributes to CBX7 function, and disruption of either interaction impacts the ability of CBX7 to repress the INK4b/ARF/INK4a locus and control senescence. Structure-guided analysis reveals the molecular interplay between noncoding RNA and H3K27me as mediated by the conserved chromodomain. Our study suggests a mechanism by which noncoding RNA participates directly in epigenetic transcriptional repression. Copyright (c) 2010 Elsevier Inc. All rights reserved.

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Year:  2010        PMID: 20541999      PMCID: PMC2886305          DOI: 10.1016/j.molcel.2010.03.021

Source DB:  PubMed          Journal:  Mol Cell        ISSN: 1097-2765            Impact factor:   17.970


  51 in total

Review 1.  In vivo cross-linking and immunoprecipitation for studying dynamic Protein:DNA associations in a chromatin environment.

Authors:  M H Kuo; C D Allis
Journal:  Methods       Date:  1999-11       Impact factor: 3.608

Review 2.  Epigenetic regulation of cellular memory by the Polycomb and Trithorax group proteins.

Authors:  Leonie Ringrose; Renato Paro
Journal:  Annu Rev Genet       Date:  2004       Impact factor: 16.830

Review 3.  RNA meets chromatin.

Authors:  Emily Bernstein; C David Allis
Journal:  Genes Dev       Date:  2005-07-15       Impact factor: 11.361

4.  Crystallography & NMR system: A new software suite for macromolecular structure determination.

Authors:  A T Brünger; P D Adams; G M Clore; W L DeLano; P Gros; R W Grosse-Kunstleve; J S Jiang; J Kuszewski; M Nilges; N S Pannu; R J Read; L M Rice; T Simonson; G L Warren
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  1998-09-01

5.  Structure of the HP1 chromodomain bound to histone H3 methylated at lysine 9.

Authors:  Peter R Nielsen; Daniel Nietlispach; Helen R Mott; Juliana Callaghan; Andrew Bannister; Tony Kouzarides; Alexey G Murzin; Natalia V Murzina; Ernest D Laue
Journal:  Nature       Date:  2002-02-20       Impact factor: 49.962

6.  Protein backbone angle restraints from searching a database for chemical shift and sequence homology.

Authors:  G Cornilescu; F Delaglio; A Bax
Journal:  J Biomol NMR       Date:  1999-03       Impact factor: 2.835

Review 7.  Multidimensional heteronuclear nuclear magnetic resonance of proteins.

Authors:  G M Clore; A M Gronenborn
Journal:  Methods Enzymol       Date:  1994       Impact factor: 1.600

8.  Structure of HP1 chromodomain bound to a lysine 9-methylated histone H3 tail.

Authors:  Steven A Jacobs; Sepideh Khorasanizadeh
Journal:  Science       Date:  2002-02-21       Impact factor: 47.728

9.  Many human large intergenic noncoding RNAs associate with chromatin-modifying complexes and affect gene expression.

Authors:  Ahmad M Khalil; Mitchell Guttman; Maite Huarte; Manuel Garber; Arjun Raj; Dianali Rivea Morales; Kelly Thomas; Aviva Presser; Bradley E Bernstein; Alexander van Oudenaarden; Aviv Regev; Eric S Lander; John L Rinn
Journal:  Proc Natl Acad Sci U S A       Date:  2009-07-01       Impact factor: 11.205

10.  Polycomb CBX7 has a unifying role in cellular lifespan.

Authors:  Jesús Gil; David Bernard; Dolores Martínez; David Beach
Journal:  Nat Cell Biol       Date:  2003-11-30       Impact factor: 28.213

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  644 in total

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Journal:  Crit Rev Biochem Mol Biol       Date:  2010-10-06       Impact factor: 8.250

Review 3.  Noncoding RNAs involved in mammary gland development and tumorigenesis: there's a long way to go.

Authors:  Amy N Shore; Jason I Herschkowitz; Jeffrey M Rosen
Journal:  J Mammary Gland Biol Neoplasia       Date:  2012-03-09       Impact factor: 2.673

4.  A lincRNA switch for embryonic stem cell fate.

Authors:  Liuqing Yang; Chunru Lin; Michael G Rosenfeld
Journal:  Cell Res       Date:  2011-10-25       Impact factor: 25.617

Review 5.  Long non-coding RNAs and cancer: a new frontier of translational research?

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Journal:  Oncogene       Date:  2012-01-23       Impact factor: 9.867

Review 6.  Argonaute and the nuclear RNAs: new pathways for RNA-mediated control of gene expression.

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Journal:  Nucleic Acid Ther       Date:  2012-01-27       Impact factor: 5.486

7.  Uncovering the role of genomic "dark matter" in human disease.

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Review 8.  Steroid-induced ocular hypertension/glaucoma: Focus on pharmacogenomics and implications for precision medicine.

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Journal:  Prog Retin Eye Res       Date:  2016-09-22       Impact factor: 21.198

Review 9.  Long non-coding RNAs: modulators of nuclear structure and function.

Authors:  Jan H Bergmann; David L Spector
Journal:  Curr Opin Cell Biol       Date:  2013-09-20       Impact factor: 8.382

Review 10.  Non-coding RNA regulation of endothelial and macrophage functions during atherosclerosis.

Authors:  Binod Aryal; Yajaira Suárez
Journal:  Vascul Pharmacol       Date:  2018-03-15       Impact factor: 5.773

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