Literature DB >> 16024654

RNA meets chromatin.

Emily Bernstein1, C David Allis.   

Abstract

In the universe of science, two worlds have recently collided-those of RNA and chromatin. The intersection of these two fields has been impending, but evidence for such a meaningful collision has only recently become apparent. In this review, we discuss the implications for noncoding RNAs and the formation of specialized chromatin domains in various epigenetic processes as diverse as dosage compensation, RNA interference-mediated heterochromatin assembly and gene silencing, and programmed DNA elimination. While mechanistic details as to how the RNA and chromatin worlds connect remain unclear, intriguing parallels exist in the overall design and machinery used in model organisms from all eukaryotic kingdoms. The role of potential RNA-binding chromatin-associated proteins will be discussed as one possible link between RNA and chromatin.

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Year:  2005        PMID: 16024654     DOI: 10.1101/gad.1324305

Source DB:  PubMed          Journal:  Genes Dev        ISSN: 0890-9369            Impact factor:   11.361


  254 in total

Review 1.  Chromatin-mediated epigenetic regulation in the malaria parasite Plasmodium falciparum.

Authors:  Liwang Cui; Jun Miao
Journal:  Eukaryot Cell       Date:  2010-05-07

Review 2.  Genome regulation by long noncoding RNAs.

Authors:  John L Rinn; Howard Y Chang
Journal:  Annu Rev Biochem       Date:  2012       Impact factor: 23.643

Review 3.  Metabolic programming, epigenetics, and gestational diabetes mellitus.

Authors:  Sara E Pinney; Rebecca A Simmons
Journal:  Curr Diab Rep       Date:  2012-02       Impact factor: 4.810

Review 4.  Epigenetic control on cell fate choice in neural stem cells.

Authors:  Xiao-Ling Hu; Yuping Wang; Qin Shen
Journal:  Protein Cell       Date:  2012-05-02       Impact factor: 14.870

Review 5.  The X as model for RNA's niche in epigenomic regulation.

Authors:  Jeannie T Lee
Journal:  Cold Spring Harb Perspect Biol       Date:  2010-03-31       Impact factor: 10.005

Review 6.  Male germ cell apoptosis: regulation and biology.

Authors:  Chandrima Shaha; Rakshamani Tripathi; Durga Prasad Mishra
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2010-05-27       Impact factor: 6.237

7.  Chromosomal detection of simple sequence repeats (SSRs) using nondenaturing FISH (ND-FISH).

Authors:  Ángeles Cuadrado; Nicolás Jouve
Journal:  Chromosoma       Date:  2010-10       Impact factor: 4.316

8.  Chromatin condensation in terminally differentiating mouse erythroblasts does not involve special architectural proteins but depends on histone deacetylation.

Authors:  Evgenya Y Popova; Sharon Wald Krauss; Sarah A Short; Gloria Lee; Jonathan Villalobos; Joan Etzell; Mark J Koury; Paul A Ney; Joel Anne Chasis; Sergei A Grigoryev
Journal:  Chromosome Res       Date:  2009-01-27       Impact factor: 5.239

9.  RNAi-dependent H3K27 methylation is required for heterochromatin formation and DNA elimination in Tetrahymena.

Authors:  Yifan Liu; Sean D Taverna; Tara L Muratore; Jeffrey Shabanowitz; Donald F Hunt; C David Allis
Journal:  Genes Dev       Date:  2007-06-15       Impact factor: 11.361

10.  Role of nucleosomal occupancy in the epigenetic silencing of the MLH1 CpG island.

Authors:  Joy C Lin; Shinwu Jeong; Gangning Liang; Daiya Takai; Merhnaz Fatemi; Yvonne C Tsai; Gerda Egger; Einav Nili Gal-Yam; Peter A Jones
Journal:  Cancer Cell       Date:  2007-11       Impact factor: 31.743

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