Literature DB >> 22546862

Uncovering the role of genomic "dark matter" in human disease.

Lance Martin1, Howard Y Chang.   

Abstract

The human genome encodes thousands of long noncoding RNAs (lncRNAs). Although most remain functionally uncharacterized biological "dark matter," lncRNAs have garnered considerable attention for their diverse roles in human biology, including developmental programs and tumor suppressor gene networks. As the number of lncRNAs associated with human disease grows, ongoing research efforts are focusing on their regulatory mechanisms. New technologies that enable enumeration of lncRNA interaction partners and determination of lncRNA structure are well positioned to drive deeper understanding of their functions and involvement in pathogenesis. In turn, lncRNAs may become targets for therapeutic intervention or new tools for biotechnology.

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Year:  2012        PMID: 22546862      PMCID: PMC3336981          DOI: 10.1172/JCI60020

Source DB:  PubMed          Journal:  J Clin Invest        ISSN: 0021-9738            Impact factor:   14.808


  79 in total

1.  Redefining microRNA targets.

Authors:  Hervé Seitz
Journal:  Curr Biol       Date:  2009-04-16       Impact factor: 10.834

Review 2.  Regulation of X-chromosome inactivation by the X-inactivation centre.

Authors:  Sandrine Augui; Elphège P Nora; Edith Heard
Journal:  Nat Rev Genet       Date:  2011-06       Impact factor: 53.242

3.  Long non-coding RNA ANRIL is required for the PRC2 recruitment to and silencing of p15(INK4B) tumor suppressor gene.

Authors:  Y Kotake; T Nakagawa; K Kitagawa; S Suzuki; N Liu; M Kitagawa; Y Xiong
Journal:  Oncogene       Date:  2010-12-13       Impact factor: 9.867

4.  Overexpression of long non-coding RNA HOTAIR predicts tumor recurrence in hepatocellular carcinoma patients following liver transplantation.

Authors:  Zhe Yang; Lin Zhou; Li-Ming Wu; Ming-Chun Lai; Hai-Yang Xie; Feng Zhang; Shu-Sen Zheng
Journal:  Ann Surg Oncol       Date:  2011-02-15       Impact factor: 5.344

5.  Crawling out of the RNA world.

Authors:  Thomas R Cech
Journal:  Cell       Date:  2009-02-20       Impact factor: 41.582

6.  Most mammalian mRNAs are conserved targets of microRNAs.

Authors:  Robin C Friedman; Kyle Kai-How Farh; Christopher B Burge; David P Bartel
Journal:  Genome Res       Date:  2008-10-27       Impact factor: 9.043

7.  Role of human noncoding RNAs in the control of tumorigenesis.

Authors:  Ling Li; Tingting Feng; Yingying Lian; Guangfeng Zhang; Alan Garen; Xu Song
Journal:  Proc Natl Acad Sci U S A       Date:  2009-07-22       Impact factor: 11.205

8.  B2 RNA and Alu RNA repress transcription by disrupting contacts between RNA polymerase II and promoter DNA within assembled complexes.

Authors:  Petro Yakovchuk; James A Goodrich; Jennifer F Kugel
Journal:  Proc Natl Acad Sci U S A       Date:  2009-03-23       Impact factor: 11.205

9.  Argonaute HITS-CLIP decodes microRNA-mRNA interaction maps.

Authors:  Sung Wook Chi; Julie B Zang; Aldo Mele; Robert B Darnell
Journal:  Nature       Date:  2009-06-17       Impact factor: 49.962

10.  GAS5, a non-protein-coding RNA, controls apoptosis and is downregulated in breast cancer.

Authors:  M Mourtada-Maarabouni; M R Pickard; V L Hedge; F Farzaneh; G T Williams
Journal:  Oncogene       Date:  2008-10-06       Impact factor: 9.867

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  38 in total

Review 1.  Regulation of mammary epithelial cell homeostasis by lncRNAs.

Authors:  Amy N Shore; Jeffrey M Rosen
Journal:  Int J Biochem Cell Biol       Date:  2014-03-26       Impact factor: 5.085

Review 2.  Managing the genomic revolution in cancer diagnostics.

Authors:  Doreen Nguyen; Christopher D Gocke
Journal:  Virchows Arch       Date:  2017-06-21       Impact factor: 4.064

3.  RNA-guided diagnostics and therapeutics for next-generation individualized nanomedicine.

Authors:  Gennadi V Glinsky
Journal:  J Clin Invest       Date:  2013-06       Impact factor: 14.808

Review 4.  The emerging roles of long noncoding RNAs in common cardiovascular diseases.

Authors:  Xiaoying Jiang; Qilan Ning
Journal:  Hypertens Res       Date:  2015-03-12       Impact factor: 3.872

5.  A novel molecular mechanism in human genetic disease: a DNA repeat-derived lncRNA.

Authors:  Daphne S Cabianca; Valentina Casa; Davide Gabellini
Journal:  RNA Biol       Date:  2012-10-01       Impact factor: 4.652

Review 6.  Long noncoding RNAs: new players in the molecular mechanism for maintenance and differentiation of pluripotent stem cells.

Authors:  Suman Ghosal; Shaoli Das; Jayprokas Chakrabarti
Journal:  Stem Cells Dev       Date:  2013-05-14       Impact factor: 3.272

7.  A misplaced lncRNA causes brachydactyly in humans.

Authors:  Philipp G Maass; Andreas Rump; Herbert Schulz; Sigmar Stricker; Lisanne Schulze; Konrad Platzer; Atakan Aydin; Sigrid Tinschert; Mary B Goldring; Friedrich C Luft; Sylvia Bähring
Journal:  J Clin Invest       Date:  2012-10-24       Impact factor: 14.808

8.  Long non-coding RNA HNF1A-AS1 promotes cell viability and migration in human bladder cancer.

Authors:  Zhihong Feng; Baolong Wang
Journal:  Oncol Lett       Date:  2018-01-26       Impact factor: 2.967

9.  Long noncoding RNA derived from CD244 signaling epigenetically controls CD8+ T-cell immune responses in tuberculosis infection.

Authors:  Yang Wang; Huiling Zhong; Xiaodan Xie; Crystal Y Chen; Dan Huang; Ling Shen; Hui Zhang; Zheng W Chen; Gucheng Zeng
Journal:  Proc Natl Acad Sci U S A       Date:  2015-07-06       Impact factor: 11.205

10.  The primate-specific noncoding RNA HPAT5 regulates pluripotency during human preimplantation development and nuclear reprogramming.

Authors:  Jens Durruthy-Durruthy; Vittorio Sebastiano; Mark Wossidlo; Diana Cepeda; Jun Cui; Edward J Grow; Jonathan Davila; Moritz Mall; Wing H Wong; Joanna Wysocka; Kin Fai Au; Renee A Reijo Pera
Journal:  Nat Genet       Date:  2015-11-23       Impact factor: 38.330

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