Literature DB >> 22266873

Long non-coding RNAs and cancer: a new frontier of translational research?

R Spizzo1, M I Almeida, A Colombatti, G A Calin.   

Abstract

Tiling array and novel sequencing technologies have made available the transcription profile of the entire human genome. However, the extent of transcription and the function of genetic elements that occur outside of protein-coding genes, particularly those involved in disease, are still a matter of debate. In this review, we focus on long non-coding RNAs (lncRNAs) that are involved in cancer. We define lncRNAs and present a cancer-oriented list of lncRNAs, list some tools (for example, public databases) that classify lncRNAs or that scan genome spans of interest to find whether known lncRNAs reside there, and describe some of the functions of lncRNAs and the possible genetic mechanisms that underlie lncRNA expression changes in cancer, as well as current and potential future applications of lncRNA research in the treatment of cancer.

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Year:  2012        PMID: 22266873      PMCID: PMC3433647          DOI: 10.1038/onc.2011.621

Source DB:  PubMed          Journal:  Oncogene        ISSN: 0950-9232            Impact factor:   9.867


  186 in total

1.  An antisense transcript induced by Wnt/beta-catenin signaling decreases E2F4.

Authors:  Gregory S Yochum; Ryan Cleland; Shannon McWeeney; Richard H Goodman
Journal:  J Biol Chem       Date:  2006-11-22       Impact factor: 5.157

Review 2.  Gene control by large noncoding RNAs.

Authors:  Ilya Shamovsky; Evgeny Nudler
Journal:  Sci STKE       Date:  2006-10-03

3.  The relationship between non-protein-coding DNA and eukaryotic complexity.

Authors:  Ryan J Taft; Michael Pheasant; John S Mattick
Journal:  Bioessays       Date:  2007-03       Impact factor: 4.345

4.  RNA maps reveal new RNA classes and a possible function for pervasive transcription.

Authors:  Philipp Kapranov; Jill Cheng; Sujit Dike; David A Nix; Radharani Duttagupta; Aarron T Willingham; Peter F Stadler; Jana Hertel; Jörg Hackermüller; Ivo L Hofacker; Ian Bell; Evelyn Cheung; Jorg Drenkow; Erica Dumais; Sandeep Patel; Gregg Helt; Madhavan Ganesh; Srinka Ghosh; Antonio Piccolboni; Victor Sementchenko; Hari Tammana; Thomas R Gingeras
Journal:  Science       Date:  2007-05-17       Impact factor: 47.728

5.  Characterization of HULC, a novel gene with striking up-regulation in hepatocellular carcinoma, as noncoding RNA.

Authors:  Katrin Panzitt; Marisa M O Tschernatsch; Christian Guelly; Tarek Moustafa; Martin Stradner; Heimo M Strohmaier; Charles R Buck; Helmut Denk; Renée Schroeder; Michael Trauner; Kurt Zatloukal
Journal:  Gastroenterology       Date:  2006-08-14       Impact factor: 22.682

6.  HOX deregulation in acute myeloid leukemia.

Authors:  Kim L Rice; Jonathan D Licht
Journal:  J Clin Invest       Date:  2007-04       Impact factor: 14.808

7.  Repression of the human dihydrofolate reductase gene by a non-coding interfering transcript.

Authors:  Igor Martianov; Aroul Ramadass; Ana Serra Barros; Natalie Chow; Alexandre Akoulitchev
Journal:  Nature       Date:  2007-01-21       Impact factor: 49.962

8.  A CTCF-binding silencer regulates the imprinted genes AWT1 and WT1-AS and exhibits sequential epigenetic defects during Wilms' tumourigenesis.

Authors:  Anne L Hancock; Keith W Brown; Kim Moorwood; Hanlim Moon; Claes Holmgren; Sudhanshu H Mardikar; Anthony R Dallosso; Elena Klenova; Dmitri Loukinov; Rolf Ohlsson; Victor V Lobanenkov; Karim Malik
Journal:  Hum Mol Genet       Date:  2007-01-08       Impact factor: 6.150

9.  fRNAdb: a platform for mining/annotating functional RNA candidates from non-coding RNA sequences.

Authors:  Taishin Kin; Kouichirou Yamada; Goro Terai; Hiroaki Okida; Yasuhiko Yoshinari; Yukiteru Ono; Aya Kojima; Yuki Kimura; Takashi Komori; Kiyoshi Asai
Journal:  Nucleic Acids Res       Date:  2006-11-11       Impact factor: 16.971

10.  RNAdb 2.0--an expanded database of mammalian non-coding RNAs.

Authors:  Ken C Pang; Stuart Stephen; Marcel E Dinger; Pär G Engström; Boris Lenhard; John S Mattick
Journal:  Nucleic Acids Res       Date:  2006-12-01       Impact factor: 16.971

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  470 in total

1.  Clinical significance of SNORA42 as an oncogene and a prognostic biomarker in colorectal cancer.

Authors:  Yoshinaga Okugawa; Yuji Toiyama; Shusuke Toden; Hiroki Mitoma; Takeshi Nagasaka; Koji Tanaka; Yasuhiro Inoue; Masato Kusunoki; C Richard Boland; Ajay Goel
Journal:  Gut       Date:  2015-10-15       Impact factor: 23.059

2.  The role of MALAT1/miR-1/slug axis on radioresistance in nasopharyngeal carcinoma.

Authors:  Chuan Jin; Bingchuan Yan; Qin Lu; Yanmin Lin; Lei Ma
Journal:  Tumour Biol       Date:  2015-10-20

Review 3.  LncRNAs: emerging players in gene regulation and disease pathogenesis.

Authors:  Mina Kazemzadeh; Reza Safaralizadeh; Ayla Valinezhad Orang
Journal:  J Genet       Date:  2015-12       Impact factor: 1.166

4.  Circulating long noncoding RNA GAS5 as a potential biomarker in breast cancer for assessing the surgical effects.

Authors:  Lu Han; Pei Ma; Song-Mei Liu; Xin Zhou
Journal:  Tumour Biol       Date:  2015-12-10

5.  Microarray profiling analysis of long non-coding RNAs expression in tendinopathy: identification for potential biomarkers and mechanisms.

Authors:  Qiang Zhang; Heng'an Ge; Yuqing Jiang; Biao Cheng; Dong Zhou; Nanwei Xu
Journal:  Int J Exp Pathol       Date:  2016-01-14       Impact factor: 1.925

Review 6.  Regulation of mammary epithelial cell homeostasis by lncRNAs.

Authors:  Amy N Shore; Jeffrey M Rosen
Journal:  Int J Biochem Cell Biol       Date:  2014-03-26       Impact factor: 5.085

7.  Long noncoding RNA GAS5 suppresses the migration and invasion of hepatocellular carcinoma cells via miR-21.

Authors:  Litian Hu; Hua Ye; Guangming Huang; Fei Luo; Yawei Liu; Yi Liu; Xiaojun Yang; Jian Shen; Qizhan Liu; Jianping Zhang
Journal:  Tumour Biol       Date:  2015-09-24

8.  Long noncoding RNA SPRY4-IT1 is upregulated in esophageal squamous cell carcinoma and associated with poor prognosis.

Authors:  Hai-Wei Xie; Qing-Quan Wu; Bin Zhu; Fang-Jun Chen; Lv Ji; Su-Qing Li; Chun-Mei Wang; Yu-Suo Tong; Lei Tuo; Ming Wu; Zhi-Hua Liu; Jin Lv; Wei-Hong Shi; Xiu-Feng Cao
Journal:  Tumour Biol       Date:  2014-05-09

9.  Quantitative Proteomics Analysis Reveals Novel Insights into Mechanisms of Action of Long Noncoding RNA Hox Transcript Antisense Intergenic RNA (HOTAIR) in HeLa Cells.

Authors:  Peng Zheng; Qian Xiong; Ying Wu; Ying Chen; Zhuo Chen; Joy Fleming; Ding Gao; Lijun Bi; Feng Ge
Journal:  Mol Cell Proteomics       Date:  2015-03-11       Impact factor: 5.911

10.  RNA-seq analysis identifies key long non-coding RNAs connected to the pathogenesis of alcohol-associated head and neck squamous cell carcinoma.

Authors:  Vicky Yu; Pranav Singh; Elham Rahimy; Hao Zheng; Selena Z Kuo; Elizabeth Kim; Jessica Wang-Rodriguez; Weg M Ongkeko
Journal:  Oncol Lett       Date:  2016-08-08       Impact factor: 2.967

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