Literature DB >> 24529241

Long non-coding RNAs: modulators of nuclear structure and function.

Jan H Bergmann1, David L Spector2.   

Abstract

Long non-coding (lnc)RNAs are emerging key factors in the regulation of various cellular processes. In the nucleus, these include the organization of nuclear sub-structures, the alteration of chromatin state, and the regulation of gene expression through the interaction with effector proteins and modulation of their activity. Collectively, lncRNAs form the core of attractive models explaining aspects of structural and dynamic regulation in the nucleus across time and space. Here we review recent studies that characterize the molecular function of a subset of these molecules in the regulation and fine-tuning of nuclear state.
Copyright © 2013 Elsevier Ltd. All rights reserved.

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Year:  2013        PMID: 24529241      PMCID: PMC3927160          DOI: 10.1016/j.ceb.2013.08.005

Source DB:  PubMed          Journal:  Curr Opin Cell Biol        ISSN: 0955-0674            Impact factor:   8.382


  101 in total

1.  The mRNA-like noncoding RNA Gomafu constitutes a novel nuclear domain in a subset of neurons.

Authors:  Masamitsu Sone; Tetsutaro Hayashi; Hiroshi Tarui; Kiyokazu Agata; Masatoshi Takeichi; Shinichi Nakagawa
Journal:  J Cell Sci       Date:  2007-07-10       Impact factor: 5.285

2.  Functional demarcation of active and silent chromatin domains in human HOX loci by noncoding RNAs.

Authors:  John L Rinn; Michael Kertesz; Jordon K Wang; Sharon L Squazzo; Xiao Xu; Samantha A Brugmann; L Henry Goodnough; Jill A Helms; Peggy J Farnham; Eran Segal; Howard Y Chang
Journal:  Cell       Date:  2007-06-29       Impact factor: 41.582

3.  Long noncoding RNA as modular scaffold of histone modification complexes.

Authors:  Miao-Chih Tsai; Ohad Manor; Yue Wan; Nima Mosammaparast; Jordon K Wang; Fei Lan; Yang Shi; Eran Segal; Howard Y Chang
Journal:  Science       Date:  2010-07-08       Impact factor: 47.728

4.  MALAT-1, a novel noncoding RNA, and thymosin beta4 predict metastasis and survival in early-stage non-small cell lung cancer.

Authors:  Ping Ji; Sven Diederichs; Wenbing Wang; Sebastian Böing; Ralf Metzger; Paul M Schneider; Nicola Tidow; Burkhard Brandt; Horst Buerger; Etmar Bulk; Michael Thomas; Wolfgang E Berdel; Hubert Serve; Carsten Müller-Tidow
Journal:  Oncogene       Date:  2003-09-11       Impact factor: 9.867

5.  Ribosome profiling provides evidence that large noncoding RNAs do not encode proteins.

Authors:  Mitchell Guttman; Pamela Russell; Nicholas T Ingolia; Jonathan S Weissman; Eric S Lander
Journal:  Cell       Date:  2013-06-27       Impact factor: 41.582

6.  Repression of the human dihydrofolate reductase gene by a non-coding interfering transcript.

Authors:  Igor Martianov; Aroul Ramadass; Ana Serra Barros; Natalie Chow; Alexandre Akoulitchev
Journal:  Nature       Date:  2007-01-21       Impact factor: 49.962

7.  XIST RNA paints the inactive X chromosome at interphase: evidence for a novel RNA involved in nuclear/chromosome structure.

Authors:  C M Clemson; J A McNeil; H F Willard; J B Lawrence
Journal:  J Cell Biol       Date:  1996-02       Impact factor: 10.539

8.  A screen for nuclear transcripts identifies two linked noncoding RNAs associated with SC35 splicing domains.

Authors:  John N Hutchinson; Alexander W Ensminger; Christine M Clemson; Christopher R Lynch; Jeanne B Lawrence; Andrew Chess
Journal:  BMC Genomics       Date:  2007-02-01       Impact factor: 3.969

9.  A mammalian pseudogene lncRNA at the interface of inflammation and anti-inflammatory therapeutics.

Authors:  Nicole A Rapicavoli; Kun Qu; Jiajing Zhang; Megan Mikhail; Remi-Martin Laberge; Howard Y Chang
Journal:  Elife       Date:  2013-07-23       Impact factor: 8.140

10.  Enhancer transcripts mark active estrogen receptor binding sites.

Authors:  Nasun Hah; Shino Murakami; Anusha Nagari; Charles G Danko; W Lee Kraus
Journal:  Genome Res       Date:  2013-05-01       Impact factor: 9.043

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  107 in total

1.  Alu element-containing RNAs maintain nucleolar structure and function.

Authors:  Maïwen Caudron-Herger; Teresa Pankert; Jeanette Seiler; Attila Németh; Renate Voit; Ingrid Grummt; Karsten Rippe
Journal:  EMBO J       Date:  2015-10-13       Impact factor: 11.598

Review 2.  Divergent actions of long noncoding RNAs on X-chromosome remodelling in mammals and Drosophila achieve the same end result: dosage compensation.

Authors:  Subhash C Lakhotia
Journal:  J Genet       Date:  2015-12       Impact factor: 1.166

3.  Long noncoding RNA MRUL promotes ABCB1 expression in multidrug-resistant gastric cancer cell sublines.

Authors:  Ying Wang; Dexin Zhang; Kaichun Wu; Qingchuan Zhao; Yongzhan Nie; Daiming Fan
Journal:  Mol Cell Biol       Date:  2014-06-23       Impact factor: 4.272

Review 4.  The Nucleoskeleton.

Authors:  Stephen A Adam
Journal:  Cold Spring Harb Perspect Biol       Date:  2017-02-01       Impact factor: 10.005

Review 5.  Signaling and Gene Regulatory Networks in Mammalian Lens Development.

Authors:  Ales Cvekl; Xin Zhang
Journal:  Trends Genet       Date:  2017-08-31       Impact factor: 11.639

Review 6.  Insight into lncRNA biology using hybridization capture analyses.

Authors:  Matthew D Simon
Journal:  Biochim Biophys Acta       Date:  2015-09-14

7.  7SK small nuclear RNA inhibits cancer cell proliferation through apoptosis induction.

Authors:  Farid Keramati; Ehsan Seyedjafari; Parviz Fallah; Masoud Soleimani; Hossein Ghanbarian
Journal:  Tumour Biol       Date:  2014-12-10

Review 8.  Non-coding RNAs as drug targets.

Authors:  Masayuki Matsui; David R Corey
Journal:  Nat Rev Drug Discov       Date:  2016-07-22       Impact factor: 84.694

9.  Overexpression of lncRNA NEAT1 mitigates multidrug resistance by inhibiting ABCG2 in leukemia.

Authors:  Caihua Gao; Jianying Zhang; Qingyan Wang; Chunhua Ren
Journal:  Oncol Lett       Date:  2016-06-16       Impact factor: 2.967

Review 10.  Noncoding RNAs in neurodegeneration.

Authors:  Evgenia Salta; Bart De Strooper
Journal:  Nat Rev Neurosci       Date:  2017-08-17       Impact factor: 34.870

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