Literature DB >> 20515430

Oligonucleotide/oligosaccharide-binding fold proteins: a growing family of genome guardians.

Rachel Litman Flynn1, Lee Zou.   

Abstract

The maintenance of genomic stability relies on the coordinated action of a number of cellular processes, including activation of the DNA-damage checkpoint, DNA replication, DNA repair, and telomere homeostasis. Many proteins involved in these cellular processes use different types of functional modules to regulate and execute their functions. Recent studies have revealed that many DNA-damage checkpoint and DNA repair proteins in human cells possess the oligonucleotide/oligosaccharide-binding (OB) fold domains, which are known to bind single-stranded DNA in both prokaryotes and eukaryotes. Furthermore, during the DNA damage response, the OB folds of the human checkpoint and DNA repair proteins play critical roles in DNA binding, protein complex assembly, and regulating protein-protein interactions. These findings suggest that the OB fold is an evolutionarily conserved functional module that is widely used by genome guardians. In this review, we will highlight the functions of several well-characterized or newly discovered eukaryotic OB-fold proteins in the DNA damage response.

Entities:  

Mesh:

Substances:

Year:  2010        PMID: 20515430      PMCID: PMC2906097          DOI: 10.3109/10409238.2010.488216

Source DB:  PubMed          Journal:  Crit Rev Biochem Mol Biol        ISSN: 1040-9238            Impact factor:   8.250


  93 in total

Review 1.  The DNA damage response: putting checkpoints in perspective.

Authors:  B B Zhou; S J Elledge
Journal:  Nature       Date:  2000-11-23       Impact factor: 49.962

Review 2.  Cell cycle checkpoint signaling through the ATM and ATR kinases.

Authors:  R T Abraham
Journal:  Genes Dev       Date:  2001-09-01       Impact factor: 11.361

Review 3.  The FHA domain in DNA repair and checkpoint signaling.

Authors:  D Durocher; S J Smerdon; M B Yaffe; S P Jackson
Journal:  Cold Spring Harb Symp Quant Biol       Date:  2000

Review 4.  OB-fold: growing bigger with functional consistency.

Authors:  Vishal Agrawal; K V Radha Kishan
Journal:  Curr Protein Pept Sci       Date:  2003-06       Impact factor: 3.272

Review 5.  OB-fold domains: a snapshot of the evolution of sequence, structure and function.

Authors:  Vickery Arcus
Journal:  Curr Opin Struct Biol       Date:  2002-12       Impact factor: 6.809

Review 6.  Single-strand DNA gaps trigger an ATR- and Cdc7-dependent checkpoint.

Authors:  Vincenzo Costanzo; Jean Gautier
Journal:  Cell Cycle       Date:  2003 Jan-Feb       Impact factor: 4.534

7.  Structure of the major single-stranded DNA-binding domain of replication protein A suggests a dynamic mechanism for DNA binding.

Authors:  E Bochkareva; V Belegu; S Korolev; A Bochkarev
Journal:  EMBO J       Date:  2001-02-01       Impact factor: 11.598

8.  Structure of the RPA trimerization core and its role in the multistep DNA-binding mechanism of RPA.

Authors:  Elena Bochkareva; Sergey Korolev; Susan P Lees-Miller; Alexey Bochkarev
Journal:  EMBO J       Date:  2002-04-02       Impact factor: 11.598

9.  BRCA2 function in DNA binding and recombination from a BRCA2-DSS1-ssDNA structure.

Authors:  Haijuan Yang; Philip D Jeffrey; Julie Miller; Elspeth Kinnucan; Yutong Sun; Nicolas H Thoma; Ning Zheng; Phang-Lang Chen; Wen-Hwa Lee; Nikola P Pavletich
Journal:  Science       Date:  2002-09-13       Impact factor: 47.728

10.  Insights into DNA recombination from the structure of a RAD51-BRCA2 complex.

Authors:  Luca Pellegrini; David S Yu; Thomas Lo; Shubha Anand; MiYoung Lee; Tom L Blundell; Ashok R Venkitaraman
Journal:  Nature       Date:  2002-11-10       Impact factor: 49.962

View more
  78 in total

1.  Structural basis for Tetrahymena telomerase processivity factor Teb1 binding to single-stranded telomeric-repeat DNA.

Authors:  Zhixiong Zeng; Bosun Min; Jing Huang; Kyungah Hong; Yuting Yang; Kathleen Collins; Ming Lei
Journal:  Proc Natl Acad Sci U S A       Date:  2011-12-05       Impact factor: 11.205

Review 2.  Structural anatomy of telomere OB proteins.

Authors:  Martin P Horvath
Journal:  Crit Rev Biochem Mol Biol       Date:  2011-10       Impact factor: 8.250

3.  Yeast two-hybrid analysis of PriB-interacting proteins in replication restart primosome: a proposed PriB-SSB interaction model.

Authors:  Yen-Hua Huang; Min-Jon Lin; Cheng-Yang Huang
Journal:  Protein J       Date:  2013-08       Impact factor: 2.371

4.  Schizosaccharomyces pombe protection of telomeres 1 utilizes alternate binding modes to accommodate different telomeric sequences.

Authors:  Sarah E Altschuler; Thayne H Dickey; Deborah S Wuttke
Journal:  Biochemistry       Date:  2011-08-16       Impact factor: 3.162

5.  RADX Promotes Genome Stability and Modulates Chemosensitivity by Regulating RAD51 at Replication Forks.

Authors:  Huzefa Dungrawala; Kamakoti P Bhat; Rémy Le Meur; Walter J Chazin; Xia Ding; Shyam K Sharan; Sarah R Wessel; Aditya A Sathe; Runxiang Zhao; David Cortez
Journal:  Mol Cell       Date:  2017-07-20       Impact factor: 17.970

Review 6.  RPA-coated single-stranded DNA as a platform for post-translational modifications in the DNA damage response.

Authors:  Alexandre Maréchal; Lee Zou
Journal:  Cell Res       Date:  2014-11-18       Impact factor: 25.617

7.  Single-Stranded DNA-Binding Proteins in the Archaea.

Authors:  Najwa Taib; Simonetta Gribaldo; Stuart A MacNeill
Journal:  Methods Mol Biol       Date:  2021

8.  Single strand DNA binding proteins 1 and 2 protect newly replicated telomeres.

Authors:  Peili Gu; Wei Deng; Ming Lei; Sandy Chang
Journal:  Cell Res       Date:  2013-03-05       Impact factor: 25.617

9.  Replication protein A dynamically regulates monoubiquitination of proliferating cell nuclear antigen.

Authors:  Mark Hedglin; Mahesh Aitha; Anthony Pedley; Stephen J Benkovic
Journal:  J Biol Chem       Date:  2019-01-30       Impact factor: 5.157

10.  Binding dynamics of a monomeric SSB protein to DNA: a single-molecule multi-process approach.

Authors:  Michael J Morten; Jose R Peregrina; Maria Figueira-Gonzalez; Katrin Ackermann; Bela E Bode; Malcolm F White; J Carlos Penedo
Journal:  Nucleic Acids Res       Date:  2015-11-17       Impact factor: 16.971

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.