Literature DB >> 33847950

Single-Stranded DNA-Binding Proteins in the Archaea.

Najwa Taib1,2, Simonetta Gribaldo1, Stuart A MacNeill3.   

Abstract

Single-stranded (ss) DNA-binding proteins are found in all three domains of life where they play vital roles in nearly all aspects of DNA metabolism by binding to and stabilizing exposed ssDNA and acting as platforms onto which DNA-processing activities can assemble. The ssDNA-binding factors SSB and RPA are extremely well conserved across bacteria and eukaryotes, respectively, and comprise one or more OB-fold ssDNA-binding domains. In the third domain of life, the archaea, multiple types of ssDNA-binding protein are found with a variety of domain architectures and subunit compositions, with OB-fold ssDNA-binding domains being a characteristic of most, but not all. This chapter summarizes current knowledge of the distribution, structure, and biological function of the archaeal ssDNA-binding factors, highlighting key features shared between clades and those that distinguish the proteins of different clades from one another. The likely cellular functions of the proteins are discussed and gaps in current knowledge identified.

Entities:  

Keywords:  Archaea; DNA repair; DNA replication; OB fold; Phylogenetics; RPA; Replication protein A; SSB; Single-stranded DNA; ssDNA

Year:  2021        PMID: 33847950     DOI: 10.1007/978-1-0716-1290-3_2

Source DB:  PubMed          Journal:  Methods Mol Biol        ISSN: 1064-3745


  55 in total

Review 1.  Nucleic acid recognition by OB-fold proteins.

Authors:  Douglas L Theobald; Rachel M Mitton-Fry; Deborah S Wuttke
Journal:  Annu Rev Biophys Biomol Struct       Date:  2003-02-18

Review 2.  Replication protein A: a heterotrimeric, single-stranded DNA-binding protein required for eukaryotic DNA metabolism.

Authors:  M S Wold
Journal:  Annu Rev Biochem       Date:  1997       Impact factor: 23.643

3.  Structure and conformational change of a replication protein A heterotrimer bound to ssDNA.

Authors:  Jie Fan; Nikola P Pavletich
Journal:  Genes Dev       Date:  2012-10-15       Impact factor: 11.361

4.  Functions of single-strand DNA-binding proteins in DNA replication, recombination, and repair.

Authors:  Aimee H Marceau
Journal:  Methods Mol Biol       Date:  2012

5.  An alternative form of replication protein a expressed in normal human tissues supports DNA repair.

Authors:  Michael G Kemp; Aaron C Mason; Aura Carreira; Joyce T Reardon; Stuart J Haring; Gloria E O Borgstahl; Stephen C Kowalczykowski; Aziz Sancar; Marc S Wold
Journal:  J Biol Chem       Date:  2009-12-07       Impact factor: 5.157

Review 6.  The tale of SSB.

Authors:  Piero R Bianco
Journal:  Prog Biophys Mol Biol       Date:  2016-11-09       Impact factor: 3.667

Review 7.  Replication protein A (RPA): the eukaryotic SSB.

Authors:  C Iftode; Y Daniely; J A Borowiec
Journal:  Crit Rev Biochem Mol Biol       Date:  1999       Impact factor: 8.250

Review 8.  The structure and function of replication protein A in DNA replication.

Authors:  Aishwarya Prakash; Gloria E O Borgstahl
Journal:  Subcell Biochem       Date:  2012

9.  Crystal structure of the Deinococcus radiodurans single-stranded DNA-binding protein suggests a mechanism for coping with DNA damage.

Authors:  Douglas A Bernstein; Julie M Eggington; Michael P Killoran; Ana M Misic; Michael M Cox; James L Keck
Journal:  Proc Natl Acad Sci U S A       Date:  2004-05-24       Impact factor: 11.205

10.  The single-stranded DNA-binding protein of Deinococcus radiodurans.

Authors:  Julie Malia Eggington; Nami Haruta; Elizabeth Anne Wood; Michael Matthew Cox
Journal:  BMC Microbiol       Date:  2004-01-12       Impact factor: 3.605

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  1 in total

Review 1.  OB-Folds and Genome Maintenance: Targeting Protein-DNA Interactions for Cancer Therapy.

Authors:  Sui Par; Sofia Vaides; Pamela S VanderVere-Carozza; Katherine S Pawelczak; Jason Stewart; John J Turchi
Journal:  Cancers (Basel)       Date:  2021-07-03       Impact factor: 6.639

  1 in total

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