Literature DB >> 20478257

Decision making at a subcellular level determines the outcome of bacteriophage infection.

Lanying Zeng1, Samuel O Skinner, Chenghang Zong, Jean Sippy, Michael Feiss, Ido Golding.   

Abstract

When the process of cell-fate determination is examined at single-cell resolution, it is often observed that individual cells undergo different fates even when subject to identical conditions. This "noisy" phenotype is usually attributed to the inherent stochasticity of chemical reactions in the cell. Here we demonstrate how the observed single-cell heterogeneity can be explained by a cascade of decisions occurring at the subcellular level. We follow the postinfection decision in bacteriophage lambda at single-virus resolution, and show that a choice between lysis and lysogeny is first made at the level of the individual virus. The decisions by all viruses infecting a single cell are then integrated in a precise (noise-free) way, such that only a unanimous vote by all viruses leads to the establishment of lysogeny. By detecting and integrating over the subcellular "hidden variables," we are able to predict the level of noise measured at the single-cell level. Copyright (c) 2010 Elsevier Inc. All rights reserved.

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Year:  2010        PMID: 20478257      PMCID: PMC2873970          DOI: 10.1016/j.cell.2010.03.034

Source DB:  PubMed          Journal:  Cell        ISSN: 0092-8674            Impact factor:   41.582


  49 in total

1.  Quantitative kinetic analysis of the bacteriophage lambda genetic network.

Authors:  Oren Kobiler; Assaf Rokney; Nir Friedman; Donald L Court; Joel Stavans; Amos B Oppenheim
Journal:  Proc Natl Acad Sci U S A       Date:  2005-02-22       Impact factor: 11.205

2.  Noise in gene expression determines cell fate in Bacillus subtilis.

Authors:  Hédia Maamar; Arjun Raj; David Dubnau
Journal:  Science       Date:  2007-06-14       Impact factor: 47.728

3.  The actin-like MreB cytoskeleton organizes viral DNA replication in bacteria.

Authors:  Daniel Muñoz-Espín; Richard Daniel; Yoshikazu Kawai; Rut Carballido-López; Virginia Castilla-Llorente; Jeff Errington; Wilfried J J Meijer; Margarita Salas
Journal:  Proc Natl Acad Sci U S A       Date:  2009-08-11       Impact factor: 11.205

4.  Architecture-dependent noise discriminates functionally analogous differentiation circuits.

Authors:  Tolga Cağatay; Marc Turcotte; Michael B Elowitz; Jordi Garcia-Ojalvo; Gürol M Süel
Journal:  Cell       Date:  2009-10-22       Impact factor: 41.582

5.  Protein mobility in the cytoplasm of Escherichia coli.

Authors:  M B Elowitz; M G Surette; P E Wolf; J B Stock; S Leibler
Journal:  J Bacteriol       Date:  1999-01       Impact factor: 3.490

Review 6.  Nature, nurture, or chance: stochastic gene expression and its consequences.

Authors:  Arjun Raj; Alexander van Oudenaarden
Journal:  Cell       Date:  2008-10-17       Impact factor: 41.582

7.  Genetic analysis of two genes, dnaJ and dnaK, necessary for Escherichia coli and bacteriophage lambda DNA replication.

Authors:  J Yochem; H Uchida; M Sunshine; H Saito; C P Georgopoulos; M Feiss
Journal:  Mol Gen Genet       Date:  1978-08-04

8.  Bacteriophage infection is targeted to cellular poles.

Authors:  Rotem Edgar; Assaf Rokney; Morgan Feeney; Szabolcs Semsey; Martin Kessel; Marcia B Goldberg; Sankar Adhya; Amos B Oppenheim
Journal:  Mol Microbiol       Date:  2008-03-19       Impact factor: 3.501

9.  Transcriptome-wide noise controls lineage choice in mammalian progenitor cells.

Authors:  Hannah H Chang; Martin Hemberg; Mauricio Barahona; Donald E Ingber; Sui Huang
Journal:  Nature       Date:  2008-05-22       Impact factor: 49.962

10.  Transcriptional pulsing of a developmental gene.

Authors:  Jonathan R Chubb; Tatjana Trcek; Shailesh M Shenoy; Robert H Singer
Journal:  Curr Biol       Date:  2006-05-23       Impact factor: 10.834

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  103 in total

1.  Ion-dependent dynamics of DNA ejections for bacteriophage lambda.

Authors:  David Wu; David Van Valen; Qicong Hu; Rob Phillips
Journal:  Biophys J       Date:  2010-08-09       Impact factor: 4.033

2.  A single-molecule Hershey-Chase experiment.

Authors:  David Van Valen; David Wu; Yi-Ju Chen; Hannah Tuson; Paul Wiggins; Rob Phillips
Journal:  Curr Biol       Date:  2012-06-21       Impact factor: 10.834

3.  A hardwired HIV latency program.

Authors:  Brandon S Razooky; Anand Pai; Katherine Aull; Igor M Rouzine; Leor S Weinberger
Journal:  Cell       Date:  2015-02-26       Impact factor: 41.582

4.  Single-virus tracking reveals a spatial receptor-dependent search mechanism.

Authors:  Eli Rothenberg; Leonardo A Sepúlveda; Samuel O Skinner; Lanying Zeng; Paul R Selvin; Ido Golding
Journal:  Biophys J       Date:  2011-06-22       Impact factor: 4.033

5.  Separating intrinsic from extrinsic fluctuations in dynamic biological systems.

Authors:  Andreas Hilfinger; Johan Paulsson
Journal:  Proc Natl Acad Sci U S A       Date:  2011-07-05       Impact factor: 11.205

Review 6.  Origins of regulated cell-to-cell variability.

Authors:  Berend Snijder; Lucas Pelkmans
Journal:  Nat Rev Mol Cell Biol       Date:  2011-01-12       Impact factor: 94.444

7.  Phage DNA dynamics in cells with different fates.

Authors:  Qiuyan Shao; Alexander Hawkins; Lanying Zeng
Journal:  Biophys J       Date:  2015-04-21       Impact factor: 4.033

Review 8.  Single-cell and multivariate approaches in genetic perturbation screens.

Authors:  Prisca Liberali; Berend Snijder; Lucas Pelkmans
Journal:  Nat Rev Genet       Date:  2014-12-02       Impact factor: 53.242

9.  Bacteriophage Cooperation Suppresses CRISPR-Cas3 and Cas9 Immunity.

Authors:  Adair L Borges; Jenny Y Zhang; MaryClare F Rollins; Beatriz A Osuna; Blake Wiedenheft; Joseph Bondy-Denomy
Journal:  Cell       Date:  2018-07-19       Impact factor: 41.582

Review 10.  Using synthetic biology to make cells tomorrow's test tubes.

Authors:  Hernan G Garcia; Robert C Brewster; Rob Phillips
Journal:  Integr Biol (Camb)       Date:  2016-03-08       Impact factor: 2.192

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