Literature DB >> 15728384

Quantitative kinetic analysis of the bacteriophage lambda genetic network.

Oren Kobiler1, Assaf Rokney, Nir Friedman, Donald L Court, Joel Stavans, Amos B Oppenheim.   

Abstract

The lysis-lysogeny decision of bacteriophage lambda has been a paradigm for a developmental genetic network, which is composed of interlocked positive and negative feedback loops. This genetic network is capable of responding to environmental signals and to the number of infecting phages. An interplay between CI and Cro functions suggested a bistable switch model for the lysis-lysogeny decision. Here, we present a real-time picture of the execution of lytic and lysogenic pathways with unprecedented temporal resolution. We monitor, in vivo, both the level and function of the CII and Q gene regulators. These activators are cotranscribed yet control opposite developmental pathways. Conditions that favor the lysogenic response show severe delay and down-regulation of Q activity, in both CII-dependent and CII-independent ways. Whereas CII activity correlates with its protein level, Q shows a pronounced threshold before its function is observed. Our quantitative analyses suggest that by regulating CII and CIII, Cro plays a key role in the ability of the lambda genetic network to sense the difference between one and more than one phage particles infecting a cell. Thus, our results provide an improved framework to explain the longstanding puzzle of the decision process.

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Year:  2005        PMID: 15728384      PMCID: PMC549295          DOI: 10.1073/pnas.0500670102

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  30 in total

1.  Restructuring of an RNA polymerase holoenzyme elongation complex by lambdoid phage Q proteins.

Authors:  M T Marr; S A Datwyler; C F Meares; J W Roberts
Journal:  Proc Natl Acad Sci U S A       Date:  2001-07-31       Impact factor: 11.205

2.  Stability puzzles in phage lambda.

Authors:  Erik Aurell; Stanley Brown; Johan Johanson; Kim Sneppen
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2002-05-16

3.  Analysis of mutations in the ninR region of bacteriophage lambda that bypass a requirement for lambda N antitermination.

Authors:  N Costantino; M Zuber; D Court
Journal:  J Bacteriol       Date:  1990-08       Impact factor: 3.490

4.  On the nature of cis-acting regulatory proteins and genetic organization in bacteriophage: the example of gene Q of bacteriophage lambda.

Authors:  H Echols; D Court; L Green
Journal:  Genetics       Date:  1976-05       Impact factor: 4.562

5.  Regulation of repressor expression in lambda.

Authors:  H Eisen; P Brachet; L Pereira da Silva; F Jacob
Journal:  Proc Natl Acad Sci U S A       Date:  1970-07       Impact factor: 11.205

6.  Characterization of a third, cII-dependent, coordinately activated promoter on phage lambda involved in lysogenic development.

Authors:  Y S Ho; M Rosenberg
Journal:  J Biol Chem       Date:  1985-09-25       Impact factor: 5.157

7.  The phage lambda CII transcriptional activator carries a C-terminal domain signaling for rapid proteolysis.

Authors:  Oren Kobiler; Simi Koby; Dinah Teff; Donald Court; Amos B Oppenheim
Journal:  Proc Natl Acad Sci U S A       Date:  2002-10-23       Impact factor: 11.205

8.  Circuit simulation of genetic networks.

Authors:  H H McAdams; L Shapiro
Journal:  Science       Date:  1995-08-04       Impact factor: 47.728

9.  In vivo recombineering of bacteriophage lambda by PCR fragments and single-strand oligonucleotides.

Authors:  Amos B Oppenheim; Alison J Rattray; Mikhail Bubunenko; Lynn C Thomason; Donald L Court
Journal:  Virology       Date:  2004-02-20       Impact factor: 3.616

Review 10.  The future of bacteriophage biology.

Authors:  Allan Campbell
Journal:  Nat Rev Genet       Date:  2003-06       Impact factor: 53.242

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  50 in total

1.  How long can bacteriophage λ change its mind?

Authors:  Szabolcs Semsey; Christopher Campion; Abdu Mohamed; Sine Lo Svenningsen
Journal:  Bacteriophage       Date:  2015-01-30

2.  Threshold effects in gene regulation: when some is not enough.

Authors:  John W Little
Journal:  Proc Natl Acad Sci U S A       Date:  2005-04-05       Impact factor: 11.205

3.  Positive autoregulation of cI is a dispensable feature of the phage lambda gene regulatory circuitry.

Authors:  Christine B Michalowski; John W Little
Journal:  J Bacteriol       Date:  2005-09       Impact factor: 3.490

4.  A synthetic phage lambda regulatory circuit.

Authors:  Shota Atsumi; John W Little
Journal:  Proc Natl Acad Sci U S A       Date:  2006-11-29       Impact factor: 11.205

Review 5.  A new look at bacteriophage lambda genetic networks.

Authors:  Donald L Court; Amos B Oppenheim; Sankar L Adhya
Journal:  J Bacteriol       Date:  2006-11-03       Impact factor: 3.490

6.  Deterministic characterization of stochastic genetic circuits.

Authors:  Matthew Scott; Terence Hwa; Brian Ingalls
Journal:  Proc Natl Acad Sci U S A       Date:  2007-04-19       Impact factor: 11.205

7.  Evidence that the promoter can influence assembly of antitermination complexes at downstream RNA sites.

Authors:  Ying Zhou; Ting Shi; Mark A Mozola; Eric R Olson; Karla Henthorn; Susan Brown; Gary N Gussin; David I Friedman
Journal:  J Bacteriol       Date:  2006-03       Impact factor: 3.490

8.  Highly designable phenotypes and mutational buffers emerge from a systematic mapping between network topology and dynamic output.

Authors:  Yigal D Nochomovitz; Hao Li
Journal:  Proc Natl Acad Sci U S A       Date:  2006-03-03       Impact factor: 11.205

9.  Role of the lytic repressor in prophage induction of phage lambda as analyzed by a module-replacement approach.

Authors:  Shota Atsumi; John W Little
Journal:  Proc Natl Acad Sci U S A       Date:  2006-03-14       Impact factor: 11.205

10.  Small-scale copy number variation and large-scale changes in gene expression.

Authors:  Yuriy Mileyko; Richard I Joh; Joshua S Weitz
Journal:  Proc Natl Acad Sci U S A       Date:  2008-10-22       Impact factor: 11.205

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