Literature DB >> 20712993

Ion-dependent dynamics of DNA ejections for bacteriophage lambda.

David Wu1, David Van Valen, Qicong Hu, Rob Phillips.   

Abstract

We studied the control parameters that govern the dynamics of in vitro DNA ejection in bacteriophage lambda. Previous work demonstrated that bacteriophage DNA is highly pressurized, and this pressure has been hypothesized to help drive DNA ejection. Ions influence this process by screening charges on DNA; however, a systematic variation of salt concentrations to explore these effects has not been undertaken. To study the nature of the forces driving DNA ejection, we performed in vitro measurements of DNA ejection in bulk and at the single-phage level. We present measurements on the dynamics of ejection and on the self-repulsion force driving ejection. We examine the role of ion concentration and identity in both measurements, and show that the charge of counterions is an important control parameter. These measurements show that the mobility of ejecting DNA is independent of ionic concentrations for a given amount of DNA in the capsid. We also present evidence that phage DNA forms loops during ejection, and confirm that this effect occurs using optical tweezers. 2010 Biophysical Society. Published by Elsevier Inc. All rights reserved.

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Year:  2010        PMID: 20712993      PMCID: PMC2920739          DOI: 10.1016/j.bpj.2010.06.024

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  46 in total

1.  DNA packaging and ejection forces in bacteriophage.

Authors:  J Kindt; S Tzlil; A Ben-Shaul; W M Gelbart
Journal:  Proc Natl Acad Sci U S A       Date:  2001-11-13       Impact factor: 11.205

2.  Cryoelectron microscopy of lambda phage DNA condensates in vitreous ice: the fine structure of DNA toroids.

Authors:  N V Hud; K H Downing
Journal:  Proc Natl Acad Sci U S A       Date:  2001-12-04       Impact factor: 11.205

3.  Osmotic pressure inhibition of DNA ejection from phage.

Authors:  Alex Evilevitch; Laurence Lavelle; Charles M Knobler; Eric Raspaud; William M Gelbart
Journal:  Proc Natl Acad Sci U S A       Date:  2003-07-24       Impact factor: 11.205

Review 4.  Fifty-three years since Hershey and Chase; much ado about pressure but which pressure is it?

Authors:  Ian J Molineux
Journal:  Virology       Date:  2006-01-05       Impact factor: 3.616

5.  Decision making at a subcellular level determines the outcome of bacteriophage infection.

Authors:  Lanying Zeng; Samuel O Skinner; Chenghang Zong; Jean Sippy; Michael Feiss; Ido Golding
Journal:  Cell       Date:  2010-05-14       Impact factor: 41.582

6.  Laminar flow cells for single-molecule studies of DNA-protein interactions.

Authors:  Laurence R Brewer; Piero R Bianco
Journal:  Nat Methods       Date:  2008-06       Impact factor: 28.547

7.  Measurement of the repulsive force between polyelectrolyte molecules in ionic solution: hydration forces between parallel DNA double helices.

Authors:  D C Rau; B Lee; V A Parsegian
Journal:  Proc Natl Acad Sci U S A       Date:  1984-05       Impact factor: 11.205

8.  Facilitation of bacteriophage lambda DNA injection by inner membrane proteins of the bacterial phosphoenol-pyruvate: carbohydrate phosphotransferase system (PTS).

Authors:  M Esquinas-Rychen; B Erni
Journal:  J Mol Microbiol Biotechnol       Date:  2001-07

9.  Crystallization of monodisperse maltoporin from wild-type and mutant strains of various Enterobacteriaceae.

Authors:  T A Keller; T Ferenci; A Prilipov; J P Rosenbusch
Journal:  Biochem Biophys Res Commun       Date:  1994-03-15       Impact factor: 3.575

10.  Fluorescence measurement of the kinetics of DNA injection by bacteriophage lambda into liposomes.

Authors:  S L Novick; J D Baldeschwieler
Journal:  Biochemistry       Date:  1988-10-04       Impact factor: 3.162

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  13 in total

1.  A single-molecule Hershey-Chase experiment.

Authors:  David Van Valen; David Wu; Yi-Ju Chen; Hannah Tuson; Paul Wiggins; Rob Phillips
Journal:  Curr Biol       Date:  2012-06-21       Impact factor: 10.834

2.  Polymorphism of DNA conformation inside the bacteriophage capsid.

Authors:  Amélie Leforestier
Journal:  J Biol Phys       Date:  2013-04-12       Impact factor: 1.365

3.  Langevin dynamics simulation of DNA ejection from a phage.

Authors:  J P Mahalik; B Hildebrandt; M Muthukumar
Journal:  J Biol Phys       Date:  2013-04-23       Impact factor: 1.365

Review 4.  High-resolution studies of lysis-lysogeny decision-making in bacteriophage lambda.

Authors:  Qiuyan Shao; Jimmy T Trinh; Lanying Zeng
Journal:  J Biol Chem       Date:  2018-09-21       Impact factor: 5.157

Review 5.  Popping the cork: mechanisms of phage genome ejection.

Authors:  Ian J Molineux; Debabrata Panja
Journal:  Nat Rev Microbiol       Date:  2013-02-04       Impact factor: 60.633

6.  Structural ensemble and dynamics of toroidal-like DNA shapes in bacteriophage ϕ29 exit cavity.

Authors:  Andrew D Hirsh; Maryna Taranova; Troy A Lionberger; Todd D Lillian; Ioan Andricioaei; N C Perkins
Journal:  Biophys J       Date:  2013-05-07       Impact factor: 4.033

7.  Time-resolved DNA release from an O-antigen-specific Salmonella bacteriophage with a contractile tail.

Authors:  Nina K Broeker; Yvette Roske; Angelo Valleriani; Mareike S Stephan; Dorothee Andres; Joachim Koetz; Udo Heinemann; Stefanie Barbirz
Journal:  J Biol Chem       Date:  2019-06-12       Impact factor: 5.157

8.  Niche adaptation limits bacteriophage predation of Vibrio cholerae in a nutrient-poor aquatic environment.

Authors:  Cecilia A Silva-Valenzuela; Andrew Camilli
Journal:  Proc Natl Acad Sci U S A       Date:  2019-01-11       Impact factor: 11.205

9.  Identification and characterization of a novel flagellum-dependent Salmonella-infecting bacteriophage, iEPS5.

Authors:  Younho Choi; Hakdong Shin; Ju-Hoon Lee; Sangryeol Ryu
Journal:  Appl Environ Microbiol       Date:  2013-06-07       Impact factor: 4.792

10.  A novel method to couple electrophysiological measurements and fluorescence imaging of suspended lipid membranes: the example of T5 bacteriophage DNA ejection.

Authors:  Nicolas Chiaruttini; Lucienne Letellier; Virgile Viasnoff
Journal:  PLoS One       Date:  2013-12-23       Impact factor: 3.240

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