Literature DB >> 17569828

Noise in gene expression determines cell fate in Bacillus subtilis.

Hédia Maamar1, Arjun Raj, David Dubnau.   

Abstract

Random cell-to-cell variations in gene expression within an isogenic population can lead to transitions between alternative states of gene expression. Little is known about how these variations (noise) in natural systems affect such transitions. In Bacillus subtilis, noise in ComK, the protein that regulates competence for DNA uptake, is thought to cause cells to transition to the competent state in which genes encoding DNA uptake proteins are expressed. We demonstrate that noise in comK expression selects cells for competence and that experimental reduction of this noise decreases the number of competent cells. We also show that transitions are limited temporally by a reduction in comK transcription. These results illustrate how such stochastic transitions are regulated in a natural system and suggest that noise characteristics are subject to evolutionary forces.

Entities:  

Mesh:

Substances:

Year:  2007        PMID: 17569828      PMCID: PMC3828679          DOI: 10.1126/science.1140818

Source DB:  PubMed          Journal:  Science        ISSN: 0036-8075            Impact factor:   47.728


  30 in total

1.  Control of stochasticity in eukaryotic gene expression.

Authors:  Jonathan M Raser; Erin K O'Shea
Journal:  Science       Date:  2004-05-27       Impact factor: 47.728

2.  Bacterial persistence as a phenotypic switch.

Authors:  Nathalie Q Balaban; Jack Merrin; Remy Chait; Lukasz Kowalik; Stanislas Leibler
Journal:  Science       Date:  2004-08-12       Impact factor: 47.728

3.  Bistability in the Bacillus subtilis K-state (competence) system requires a positive feedback loop.

Authors:  Hédia Maamar; David Dubnau
Journal:  Mol Microbiol       Date:  2005-05       Impact factor: 3.501

4.  Stripping Bacillus: ComK auto-stimulation is responsible for the bistable response in competence development.

Authors:  Wiep Klaas Smits; Caroline C Eschevins; Kim A Susanna; Sierd Bron; Oscar P Kuipers; Leendert W Hamoen
Journal:  Mol Microbiol       Date:  2005-05       Impact factor: 3.501

5.  The competence transcription factor of Bacillus subtilis recognizes short A/T-rich sequences arranged in a unique, flexible pattern along the DNA helix.

Authors:  L W Hamoen; A F Van Werkhoven; J J Bijlsma; D Dubnau; G Venema
Journal:  Genes Dev       Date:  1998-05-15       Impact factor: 11.361

6.  Visualization of single RNA transcripts in situ.

Authors:  A M Femino; F S Fay; K Fogarty; R H Singer
Journal:  Science       Date:  1998-04-24       Impact factor: 47.728

7.  comK encodes the competence transcription factor, the key regulatory protein for competence development in Bacillus subtilis.

Authors:  D van Sinderen; A Luttinger; L Kong; D Dubnau; G Venema; L Hamoen
Journal:  Mol Microbiol       Date:  1995-02       Impact factor: 3.501

8.  The regulation of competence transcription factor synthesis constitutes a critical control point in the regulation of competence in Bacillus subtilis.

Authors:  J Hahn; L Kong; D Dubnau
Journal:  J Bacteriol       Date:  1994-09       Impact factor: 3.490

9.  comK acts as an autoregulatory control switch in the signal transduction route to competence in Bacillus subtilis.

Authors:  D van Sinderen; G Venema
Journal:  J Bacteriol       Date:  1994-09       Impact factor: 3.490

10.  The Rok protein of Bacillus subtilis represses genes for cell surface and extracellular functions.

Authors:  Mark Albano; Wiep Klaas Smits; Linh T Y Ho; Barbara Kraigher; Ines Mandic-Mulec; Oscar P Kuipers; David Dubnau
Journal:  J Bacteriol       Date:  2005-03       Impact factor: 3.490

View more
  279 in total

Review 1.  The unexpected traits associated with core promoter elements.

Authors:  Rivka Dikstein
Journal:  Transcription       Date:  2011 Sep-Oct

2.  Locked nucleic acid and flow cytometry-fluorescence in situ hybridization for the detection of bacterial small noncoding RNAs.

Authors:  Kelly L Robertson; Gary J Vora
Journal:  Appl Environ Microbiol       Date:  2011-11-04       Impact factor: 4.792

3.  Microbial scout hypothesis, stochastic exit from dormancy, and the nature of slow growers.

Authors:  S Buerger; A Spoering; E Gavrish; C Leslin; L Ling; S S Epstein
Journal:  Appl Environ Microbiol       Date:  2012-02-24       Impact factor: 4.792

4.  Emergent bistability: effects of additive and multiplicative noise.

Authors:  S Ghosh; S Banerjee; I Bose
Journal:  Eur Phys J E Soft Matter       Date:  2012-02-23       Impact factor: 1.890

Review 5.  Epigenetic memories: structural marks or active circuits?

Authors:  Floriane Nicol-Benoît; Pascale Le-Goff; Yves Le-Dréan; Florence Demay; Farzad Pakdel; Gilles Flouriot; Denis Michel
Journal:  Cell Mol Life Sci       Date:  2012-02-14       Impact factor: 9.261

Review 6.  The role of physiological heterogeneity in microbial population behavior.

Authors:  Mary E Lidstrom; Michael C Konopka
Journal:  Nat Chem Biol       Date:  2010-09-17       Impact factor: 15.040

7.  Bacteria determine fate by playing dice with controlled odds.

Authors:  Eshel Ben-Jacob; Daniel Schultz
Journal:  Proc Natl Acad Sci U S A       Date:  2010-07-21       Impact factor: 11.205

8.  Broadly heterogeneous activation of the master regulator for sporulation in Bacillus subtilis.

Authors:  Arnaud Chastanet; Dennis Vitkup; Guo-Cheng Yuan; Thomas M Norman; Jun S Liu; Richard M Losick
Journal:  Proc Natl Acad Sci U S A       Date:  2010-04-19       Impact factor: 11.205

9.  Transcriptional bursting from the HIV-1 promoter is a significant source of stochastic noise in HIV-1 gene expression.

Authors:  Abhyudai Singh; Brandon Razooky; Chris D Cox; Michael L Simpson; Leor S Weinberger
Journal:  Biophys J       Date:  2010-04-21       Impact factor: 4.033

10.  Measurement of the copy number of the master quorum-sensing regulator of a bacterial cell.

Authors:  Shu-Wen Teng; Yufang Wang; Kimberly C Tu; Tao Long; Pankaj Mehta; Ned S Wingreen; Bonnie L Bassler; N P Ong
Journal:  Biophys J       Date:  2010-05-19       Impact factor: 4.033

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.