Literature DB >> 27471339

Simultaneous Cortical Surface Labeling and Sulcal Curve Extraction.

Zhen Yang1, Aaron Carass1, Chen Chen1, Jerry L Prince2.   

Abstract

Automatic labeling of the gyri and sulci on the cortical surface is important for studying cortical morphology and brain functions within populations. A method to simultaneously label gyral regions and extract sulcal curves is proposed. Assuming that the gyral regions parcellate the whole cortical surface into contiguous regions with certain fixed topology, the proposed method labels the subject cortical surface by deformably registering a network of curves that form the boundary of gyral regions to the subject cortical surface. In the registration process, the curves are encouraged to follow the fine details of the sulcal geometry and to observe the shape statistics learned from training data. Using the framework of probabilistic point set registration methods, the proposed algorithm finds the sulcal curve network that maximizes the posterior probability by Expectation-Maximization (EM). The automatic labeling method was evaluated on 15 cortical surfaces using a leave-one-out strategy. Quantitative error analysis is carried out on both labeled regions and major sulcal curves.

Entities:  

Keywords:  Automatic gyral labeling; cortical surface; point set registration; statistical shape model; sulcal curve extraction

Year:  2012        PMID: 27471339      PMCID: PMC4959948          DOI: 10.1117/12.910552

Source DB:  PubMed          Journal:  Proc SPIE Int Soc Opt Eng        ISSN: 0277-786X


  13 in total

1.  Automated sulcal segmentation using watersheds on the cortical surface.

Authors:  Maryam E Rettmann; Xiao Han; Chenyang Xu; Jerry L Prince
Journal:  Neuroimage       Date:  2002-02       Impact factor: 6.556

2.  Using a statistical shape model to extract sulcal curves on the outer cortex of the human brain.

Authors:  Xiaodong Tao; Jerry L Prince; Christos Davatzikos
Journal:  IEEE Trans Med Imaging       Date:  2002-05       Impact factor: 10.048

3.  Mapping techniques for aligning sulci across multiple brains.

Authors:  Duygu Tosun; Maryam E Rettmann; Jerry L Prince
Journal:  Med Image Anal       Date:  2004-09       Impact factor: 8.545

4.  Extracting line representations of sulcal and gyral patterns in MR images of the human brain.

Authors:  G Lohmann
Journal:  IEEE Trans Med Imaging       Date:  1998-12       Impact factor: 10.048

5.  Spectral-based automatic labeling and refining of human cortical sulcal curves using expert-provided examples.

Authors:  Ilwoo Lyu; Joon-Kyung Seong; Sung Yong Shin; Kiho Im; Jee Hoon Roh; Min-Jeong Kim; Geon Ha Kim; Jong Hun Kim; Alan C Evans; Duk L Na; Jong-Min Lee
Journal:  Neuroimage       Date:  2010-04-02       Impact factor: 6.556

6.  CRUISE: cortical reconstruction using implicit surface evolution.

Authors:  Xiao Han; Dzung L Pham; Duygu Tosun; Maryam E Rettmann; Chenyang Xu; Jerry L Prince
Journal:  Neuroimage       Date:  2004-11       Impact factor: 6.556

7.  An automated labeling system for subdividing the human cerebral cortex on MRI scans into gyral based regions of interest.

Authors:  Rahul S Desikan; Florent Ségonne; Bruce Fischl; Brian T Quinn; Bradford C Dickerson; Deborah Blacker; Randy L Buckner; Anders M Dale; R Paul Maguire; Bradley T Hyman; Marilyn S Albert; Ronald J Killiany
Journal:  Neuroimage       Date:  2006-03-10       Impact factor: 6.556

8.  Topology-preserving tissue classification of magnetic resonance brain images.

Authors:  Pierre-Louis Bazin; Dzung L Pham
Journal:  IEEE Trans Med Imaging       Date:  2007-04       Impact factor: 10.048

9.  Surface-based labeling of cortical anatomy using a deformable atlas.

Authors:  S Sandor; R Leahy
Journal:  IEEE Trans Med Imaging       Date:  1997-02       Impact factor: 10.048

10.  Simple paradigm for extra-cerebral tissue removal: algorithm and analysis.

Authors:  Aaron Carass; Jennifer Cuzzocreo; M Bryan Wheeler; Pierre-Louis Bazin; Susan M Resnick; Jerry L Prince
Journal:  Neuroimage       Date:  2011-03-31       Impact factor: 6.556

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  2 in total

1.  Landmark Based Shape Analysis for Cerebellar Ataxia Classification and Cerebellar Atrophy Pattern Visualization.

Authors:  Zhen Yang; S Mazdak Abulnaga; Aaron Carass; Kalyani Kansal; Bruno M Jedynak; Chiadi Onyike; Sarah H Ying; Jerry L Prince
Journal:  Proc SPIE Int Soc Opt Eng       Date:  2016-03-21

2.  A toolbox to visually explore cerebellar shape changes in cerebellar disease and dysfunction.

Authors:  S Mazdak Abulnaga; Zhen Yang; Aaron Carass; Kalyani Kansal; Bruno M Jedynak; Chiadi U Onyike; Sarah H Ying; Jerry L Prince
Journal:  Proc SPIE Int Soc Opt Eng       Date:  2016-03-24
  2 in total

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