Literature DB >> 20354712

Identification of poisonous plants by DNA barcoding approach.

Ilaria Bruni1, Fabrizio De Mattia, Andrea Galimberti, Gabriele Galasso, Enrico Banfi, Maurizio Casiraghi, Massimo Labra.   

Abstract

The plant exposures are one of the most frequent poisonings reported to poison control centres. The diagnosis of intoxicated patients is usually based on the morphological analysis of ingested plant portions; this procedure requires experience in systematic botany, because the plant identification is based on few evident traits. The objective of this research is to test DNA barcoding approach as a new universal tool to identify toxic plants univocally and rapidly. Five DNA barcode regions were evaluated: three cpDNA sequences (trnH-psbA, rpoB and matK) and two nuclear regions (At103 and sqd1). The performance of these markers was evaluated in three plant groups: (1) a large collection of angiosperms containing different toxic substances, (2) congeneric species showing different degrees of toxicity and (3) congeneric edible and poisonous plants. Based on assessments of PCR, sequence quality and resolution power in species discrimination, we recommend the combination of plastidial and nuclear markers to identify toxic plants. Concerning plastidial markers, matK and trnH-psbA showed consistent genetic variability. However, in agreement with CBOL Plant Working Group, we selected matK as the best marker, because trnH-psbA showed some problems in sequences sizes and alignments. As a final and relevant observation, we also propose the combination of matK with a nuclear marker such as At103 to distinguish toxic hybrids form parental species. In conclusion, our data support the claim that DNA barcoding is a powerful tool for poisonous plant identifications.

Entities:  

Mesh:

Substances:

Year:  2010        PMID: 20354712     DOI: 10.1007/s00414-010-0447-3

Source DB:  PubMed          Journal:  Int J Legal Med        ISSN: 0937-9827            Impact factor:   2.686


  25 in total

1.  Biological identifications through DNA barcodes.

Authors:  Paul D N Hebert; Alina Cywinska; Shelley L Ball; Jeremy R deWaard
Journal:  Proc Biol Sci       Date:  2003-02-07       Impact factor: 5.349

2.  Molecular phylogenetics of Caryophyllales based on nuclear 18S rDNA and plastid rbcL, atpB, and matK DNA sequences.

Authors:  Philippe Cuénoud; Vincent Savolainen; Lars W Chatrou; Martyn Powell; Renée J Grayer; Mark W Chase
Journal:  Am J Bot       Date:  2002-01       Impact factor: 3.844

3.  DNA barcoding: a six-question tour to improve users' awareness about the method.

Authors:  Maurizio Casiraghi; Massimo Labra; Emanuele Ferri; Andrea Galimberti; Fabrizio De Mattia
Journal:  Brief Bioinform       Date:  2010-02-15       Impact factor: 11.622

4.  Plant DNA barcodes and species resolution in sedges (Carex, Cyperaceae).

Authors:  Julian R Starr; Robert F C Naczi; Brianna N Chouinard
Journal:  Mol Ecol Resour       Date:  2009-05       Impact factor: 7.090

5.  Selecting barcoding loci for plants: evaluation of seven candidate loci with species-level sampling in three divergent groups of land plants.

Authors:  Michelle L Hollingsworth; Alex Andra Clark; Laura L Forrest; James Richardson; R Toby Pennington; David G Long; Robyn Cowan; Mark W Chase; Myriam Gaudeul; Peter M Hollingsworth
Journal:  Mol Ecol Resour       Date:  2009-01-31       Impact factor: 7.090

6.  Philodendron--an infant death.

Authors:  M S McIntire; J R Guest; J F Porterfield
Journal:  J Toxicol Clin Toxicol       Date:  1990

7.  Glycoalkaloids as biomarkers for recognition of cultivated, wild, and somatic hybrids of potato.

Authors:  Salvatore Savarese; Anna Andolfi; Alessio Cimmino; Domenico Carputo; Luigi Frusciante; Antonio Evidente
Journal:  Chem Biodivers       Date:  2009-04       Impact factor: 2.408

Review 8.  Essentiality and toxicity of selenium and its status in Australia: a review.

Authors:  Ujang Tinggi
Journal:  Toxicol Lett       Date:  2003-01-31       Impact factor: 4.372

9.  A two-locus global DNA barcode for land plants: the coding rbcL gene complements the non-coding trnH-psbA spacer region.

Authors:  W John Kress; David L Erickson
Journal:  PLoS One       Date:  2007-06-06       Impact factor: 3.240

10.  Studying seabird diet through genetic analysis of faeces: a case study on macaroni penguins (Eudyptes chrysolophus).

Authors:  Bruce E Deagle; Nick J Gales; Karen Evans; Simon N Jarman; Sarah Robinson; Rowan Trebilco; Mark A Hindell
Journal:  PLoS One       Date:  2007-09-05       Impact factor: 3.240

View more
  26 in total

1.  The validation of a 15 STR multiplex PCR for Cannabis species.

Authors:  Stephan Köhnemann; Johanna Nedele; Daniela Schwotzer; Julia Morzfeld; Heidi Pfeiffer
Journal:  Int J Legal Med       Date:  2012-05-10       Impact factor: 2.686

2.  Application of direct PCR in a forensic case of yew poisoning.

Authors:  Christian Gausterer; Christina Stein; Thomas Stimpfl
Journal:  Int J Legal Med       Date:  2011-07-31       Impact factor: 2.686

Review 3.  Poisonous or non-poisonous plants? DNA-based tools and applications for accurate identification.

Authors:  Valerio Mezzasalma; Ioannis Ganopoulos; Andrea Galimberti; Laura Cornara; Emanuele Ferri; Massimo Labra
Journal:  Int J Legal Med       Date:  2016-10-30       Impact factor: 2.686

4.  Genus identification of toxic plant by real-time PCR.

Authors:  Shuji Matsuyama; Katsuji Nishi
Journal:  Int J Legal Med       Date:  2010-07-10       Impact factor: 2.686

5.  A protocol for obtaining DNA barcodes from plant and insect fragments isolated from forensic-type soils.

Authors:  Kelly A Meiklejohn; Megan L Jackson; Libby A Stern; James M Robertson
Journal:  Int J Legal Med       Date:  2018-02-08       Impact factor: 2.686

6.  Assessing product adulteration in natural health products for laxative yielding plants, Cassia, Senna, and Chamaecrista, in Southern India using DNA barcoding.

Authors:  Gopalakrishnan Saroja Seethapathy; Doss Ganesh; Jayanthinagar Urumarudappa Santhosh Kumar; Umapathy Senthilkumar; Steven G Newmaster; Subramanyam Ragupathy; Ramanan Uma Shaanker; Gudasalamani Ravikanth
Journal:  Int J Legal Med       Date:  2014-11-26       Impact factor: 2.686

7.  A segment of rbcL gene as a potential tool for forensic discrimination of Cannabis sativa seized at Rio de Janeiro, Brazil.

Authors:  I C T Mello; A S D Ribeiro; V H G Dias; R Silva; B D Sabino; R G Garrido; L Seldin; Rodrigo Soares de Moura Neto
Journal:  Int J Legal Med       Date:  2015-06-20       Impact factor: 2.686

8.  DNA barcoding as an effective tool in improving a digital plant identification system: a case study for the area of Mt. Valerio, Trieste (NE Italy).

Authors:  Ilaria Bruni; Fabrizio De Mattia; Stefano Martellos; Andrea Galimberti; Paolo Savadori; Maurizio Casiraghi; Pier Luigi Nimis; Massimo Labra
Journal:  PLoS One       Date:  2012-09-10       Impact factor: 3.240

9.  Sampling strategy and potential utility of indels for DNA barcoding of closely related plant species: a case study in taxus.

Authors:  Jie Liu; Jim Provan; Lian-Ming Gao; De-Zhu Li
Journal:  Int J Mol Sci       Date:  2012-07-13       Impact factor: 6.208

10.  Swipe Right: a Comparison of Accuracy of Plant Identification Apps for Toxic Plants.

Authors:  Jenna Otter; Stephanie Mayer; Christian A Tomaszewski
Journal:  J Med Toxicol       Date:  2020-08-13
View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.