Literature DB >> 20156987

DNA barcoding: a six-question tour to improve users' awareness about the method.

Maurizio Casiraghi1, Massimo Labra, Emanuele Ferri, Andrea Galimberti, Fabrizio De Mattia.   

Abstract

DNA barcoding is a recent and widely used molecular-based identification system that aims to identify biological specimens, and to assign them to a given species. However, DNA barcoding is even more than this, and besides many practical uses, it can be considered the core of an integrated taxonomic system, where bioinformatics plays a key role. DNA barcoding data could be interpreted in different ways depending on the examined taxa but the technique relies on standardized approaches, methods and analyses. The existing reference towards a common way to treat DNA barcoding data, analyses and results is the Barcode of Life Data Systems. However, the scientific community has produced in the recent years a number of alternative methods to manage barcoding data. The present work starts from this point, because users should be aware of the consequences their choices produce on the results. Despite the fact that a strict standardization is the essence of DNA barcoding, we propose a tour of six questions to improve the users' awareness about the method, the correct use of concepts and alternative tools provided by scientific community.

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Year:  2010        PMID: 20156987     DOI: 10.1093/bib/bbq003

Source DB:  PubMed          Journal:  Brief Bioinform        ISSN: 1467-5463            Impact factor:   11.622


  37 in total

1.  Partitioning the genetic diversity of a virus family: approach and evaluation through a case study of picornaviruses.

Authors:  Chris Lauber; Alexander E Gorbalenya
Journal:  J Virol       Date:  2012-01-25       Impact factor: 5.103

2.  Identification of poisonous plants by DNA barcoding approach.

Authors:  Ilaria Bruni; Fabrizio De Mattia; Andrea Galimberti; Gabriele Galasso; Enrico Banfi; Maurizio Casiraghi; Massimo Labra
Journal:  Int J Legal Med       Date:  2010-03-31       Impact factor: 2.686

3.  DNA barcoding of nymphalid butterflies (Nymphalidae: Lepidoptera) from Western Ghats of India.

Authors:  S S Gaikwad; H V Ghate; S S Ghaskadbi; M S Patole; Y S Shouche
Journal:  Mol Biol Rep       Date:  2011-06-14       Impact factor: 2.316

Review 4.  Poisonous or non-poisonous plants? DNA-based tools and applications for accurate identification.

Authors:  Valerio Mezzasalma; Ioannis Ganopoulos; Andrea Galimberti; Laura Cornara; Emanuele Ferri; Massimo Labra
Journal:  Int J Legal Med       Date:  2016-10-30       Impact factor: 2.686

Review 5.  The changing epitome of species identification - DNA barcoding.

Authors:  M Ajmal Ali; Gábor Gyulai; Norbert Hidvégi; Balázs Kerti; Fahad M A Al Hemaid; Arun K Pandey; Joongku Lee
Journal:  Saudi J Biol Sci       Date:  2014-03-31       Impact factor: 4.219

Review 6.  A world review of reported myiases caused by flower flies (Diptera: Syrphidae), including the first case of human myiasis from Palpada scutellaris (Fabricius, 1805).

Authors:  Celeste Pérez-Bañón; Cecilia Rojas; Mario Vargas; Ximo Mengual; Santos Rojo
Journal:  Parasitol Res       Date:  2020-01-31       Impact factor: 2.289

7.  Smart drugs: green shuttle or real drug?

Authors:  L Cornara; B Borghesi; C Canali; M Andrenacci; M Basso; S Federici; M Labra
Journal:  Int J Legal Med       Date:  2013-07-11       Impact factor: 2.686

8.  DNA barcoding of vouchered xylarium wood specimens of nine endangered Dalbergia species.

Authors:  Min Yu; Lichao Jiao; Juan Guo; Alex C Wiedenhoeft; Tuo He; Xiaomei Jiang; Yafang Yin
Journal:  Planta       Date:  2017-08-19       Impact factor: 4.116

9.  DNA barcoding as an effective tool in improving a digital plant identification system: a case study for the area of Mt. Valerio, Trieste (NE Italy).

Authors:  Ilaria Bruni; Fabrizio De Mattia; Stefano Martellos; Andrea Galimberti; Paolo Savadori; Maurizio Casiraghi; Pier Luigi Nimis; Massimo Labra
Journal:  PLoS One       Date:  2012-09-10       Impact factor: 3.240

10.  Frequency matrix approach demonstrates high sequence quality in avian BARCODEs and highlights cryptic pseudogenes.

Authors:  Mark Y Stoeckle; Kevin C R Kerr
Journal:  PLoS One       Date:  2012-08-27       Impact factor: 3.240

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