Literature DB >> 20354595

An integrated model for enzyme catalysis emerges from studies of hydrogen tunneling.

Judith P Klinman1.   

Abstract

The origins of the enormous rate accelerations brought about by enzymes are discussed. The focus is on enzymatic C-H activation, which has been shown to take place via tunneling. Four enzyme systems illustrate the impact of site-specific mutagenesis, changes in temperature or changes in protein solvation on the tunneling properties. A model emerges in which conformational sampling is required to access a subset of protein conformers where the H-donor and acceptor undergo a close approach. The evidence for an inverse relationship between protein flexibility and active site compression is likely to extend to all classes of enzyme catalysts.

Entities:  

Year:  2009        PMID: 20354595      PMCID: PMC2846846          DOI: 10.1016/j.cplett.2009.01.038

Source DB:  PubMed          Journal:  Chem Phys Lett        ISSN: 0009-2614            Impact factor:   2.328


  56 in total

1.  Toward high-resolution de novo structure prediction for small proteins.

Authors:  Philip Bradley; Kira M S Misura; David Baker
Journal:  Science       Date:  2005-09-16       Impact factor: 47.728

2.  Linking protein structure and dynamics to catalysis: the role of hydrogen tunnelling.

Authors:  Judith P Klinman
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2006-08-29       Impact factor: 6.237

3.  Coordinated effects of distal mutations on environmentally coupled tunneling in dihydrofolate reductase.

Authors:  Lin Wang; Nina M Goodey; Stephen J Benkovic; Amnon Kohen
Journal:  Proc Natl Acad Sci U S A       Date:  2006-10-10       Impact factor: 11.205

4.  Probes of hydrogen tunneling with horse liver alcohol dehydrogenase at subzero temperatures.

Authors:  S Tsai ; J P Klinman
Journal:  Biochemistry       Date:  2001-02-20       Impact factor: 3.162

5.  Retraction.

Authors:  Mary A Dwyer; Loren L Looger; Homme W Hellinga
Journal:  Science       Date:  2008-02-01       Impact factor: 47.728

6.  Enzyme dynamics and hydrogen tunnelling in a thermophilic alcohol dehydrogenase.

Authors:  A Kohen; R Cannio; S Bartolucci; J P Klinman
Journal:  Nature       Date:  1999-06-03       Impact factor: 49.962

7.  An internal equilibrium preorganizes the enzyme-substrate complex for hydride tunneling in choline oxidase.

Authors:  Fan Fan; Giovanni Gadda
Journal:  Biochemistry       Date:  2007-05-02       Impact factor: 3.162

8.  Comparison of rates and kinetic isotope effects using PEG-modified variants and glycoforms of glucose oxidase: the relationship of modification of the protein envelope to C-H activation and tunneling.

Authors:  Sean L Seymour; Judith P Klinman
Journal:  Biochemistry       Date:  2002-07-09       Impact factor: 3.162

9.  Crystal structure and amide H/D exchange of binary complexes of alcohol dehydrogenase from Bacillus stearothermophilus: insight into thermostability and cofactor binding.

Authors:  Christopher Ceccarelli; Zhao-Xun Liang; Michael Strickler; Gerd Prehna; Barry M Goldstein; Judith P Klinman; Brian J Bahnson
Journal:  Biochemistry       Date:  2004-05-11       Impact factor: 3.162

10.  Evidence that both protium and deuterium undergo significant tunneling in the reaction catalyzed by bovine serum amine oxidase.

Authors:  K L Grant; J P Klinman
Journal:  Biochemistry       Date:  1989-08-08       Impact factor: 3.162

View more
  50 in total

1.  Temperature dependence of protein motions in a thermophilic dihydrofolate reductase and its relationship to catalytic efficiency.

Authors:  Olayinka A Oyeyemi; Kevin M Sours; Thomas Lee; Katheryn A Resing; Natalie G Ahn; Judith P Klinman
Journal:  Proc Natl Acad Sci U S A       Date:  2010-05-13       Impact factor: 11.205

2.  Probing quantum and dynamic effects in concerted proton-electron transfer reactions of phenol-base compounds.

Authors:  Todd F Markle; Adam L Tenderholt; James M Mayer
Journal:  J Phys Chem B       Date:  2011-12-23       Impact factor: 2.991

3.  Enzymatic methyl transfer: role of an active site residue in generating active site compaction that correlates with catalytic efficiency.

Authors:  Jianyu Zhang; Judith P Klinman
Journal:  J Am Chem Soc       Date:  2011-10-10       Impact factor: 15.419

4.  Moving Through Barriers in Science and Life.

Authors:  Judith P Klinman
Journal:  Annu Rev Biochem       Date:  2019-06-20       Impact factor: 23.643

5.  Evidence for substrate preorganization in the peptidylglycine α-amidating monooxygenase reaction describing the contribution of ground state structure to hydrogen tunneling.

Authors:  Neil R McIntyre; Edward W Lowe; Jonathan L Belof; Milena Ivkovic; Jacob Shafer; Brian Space; David J Merkler
Journal:  J Am Chem Soc       Date:  2010-11-02       Impact factor: 15.419

6.  A 21st century revisionist's view at a turning point in enzymology.

Authors:  Zachary D Nagel; Judith P Klinman
Journal:  Nat Chem Biol       Date:  2009-08       Impact factor: 15.040

7.  Modular behavior of tauD provides insight into the origin of specificity in alpha-ketoglutarate-dependent nonheme iron oxygenases.

Authors:  Kevin P McCusker; Judith P Klinman
Journal:  Proc Natl Acad Sci U S A       Date:  2009-11-05       Impact factor: 11.205

8.  The effect of electrostatic shielding on H tunneling in R67 dihydrofolate reductase.

Authors:  Atsushi Yahashiri; Guy Nimrod; Nir Ben-Tal; Elizabeth E Howell; Amnon Kohen
Journal:  Chembiochem       Date:  2009-11-02       Impact factor: 3.164

9.  Structural analysis of aliphatic versus aromatic substrate specificity in a copper amine oxidase from Hansenula polymorpha.

Authors:  Valerie J Klema; Corinne J Solheid; Judith P Klinman; Carrie M Wilmot
Journal:  Biochemistry       Date:  2013-03-22       Impact factor: 3.162

10.  Computational identification of slow conformational fluctuations in proteins.

Authors:  Arvind Ramanathan; Pratul K Agarwal
Journal:  J Phys Chem B       Date:  2009-12-31       Impact factor: 2.991

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.