Literature DB >> 19892731

Modular behavior of tauD provides insight into the origin of specificity in alpha-ketoglutarate-dependent nonheme iron oxygenases.

Kevin P McCusker1, Judith P Klinman.   

Abstract

Taurine alpha-ketoglutarate dioxygenase (tauD) is one of the best-studied alpha-ketoglutarate (alphaKG)-dependent nonheme iron oxygenases. As with all oxygenases, a fine balance must be struck between generating a species sufficiently reactive for the required chemistry and controlling that species to prevent undesirable side reactions [Klinman JP (2007) Accts Chem Res 40:325-333]. In the case of tauD, the substrate oxidizing species has been shown to be a ferryl-oxo, and the introduction of deuterium at the reactive position of substrate results in an enormous kinetic isotope effect together with a partial uncoupling of oxygen activation from substrate oxidation [Price JC, Barr EW, Glass TE, Krebs C, Bollinger JM (2003) J Am Chem Soc 125:13008-13009]. We have generated a series of site-specific variants at a position that resides directly behind bound substrate (F159 to L, V, A, and G). Decreasing side-chain bulk diminishes the coupling of oxygen activation to C-H cleavage, which is further reduced by substrate deuteration. Despite this impact, oxygen activation remains completely coupled to the oxidative decarboxylation of alphaKG. The concentration of bis-Tris buffer impacts the extent of coupling of oxygen activation to C-H cleavage, implicating the buffer in the uncoupling pathway. These data indicate a critical role for residue 159 in substrate positioning and reaction in tauD and show that minor active-site perturbations in these enzymes could allow for changes in substrate reactivity while maintaining substrate triggering and oxygen binding/activation.

Entities:  

Mesh:

Substances:

Year:  2009        PMID: 19892731      PMCID: PMC2785245          DOI: 10.1073/pnas.0910660106

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  31 in total

1.  Structural origins of the selectivity of the trifunctional oxygenase clavaminic acid synthase.

Authors:  Z Zhang; J Ren; D K Stammers; J E Baldwin; K Harlos; C J Schofield
Journal:  Nat Struct Biol       Date:  2000-02

2.  Geometric and electronic structure/function correlations in non-heme iron enzymes.

Authors:  E I Solomon; T C Brunold; M I Davis; J N Kemsley; S K Lee; N Lehnert; F Neese; A J Skulan; Y S Yang; J Zhou
Journal:  Chem Rev       Date:  2000-01-12       Impact factor: 60.622

Review 3.  Dioxygen activation at mononuclear nonheme iron active sites: enzymes, models, and intermediates.

Authors:  Miquel Costas; Mark P Mehn; Michael P Jensen; Lawrence Que
Journal:  Chem Rev       Date:  2004-02       Impact factor: 60.622

4.  A 21st century revisionist's view at a turning point in enzymology.

Authors:  Zachary D Nagel; Judith P Klinman
Journal:  Nat Chem Biol       Date:  2009-08       Impact factor: 15.040

5.  A stereochemical concept for the catalytic mechanism of prolylhydroxylase: applicability to classification and design of inhibitors.

Authors:  H M Hanauske-Abel; V Günzler
Journal:  J Theor Biol       Date:  1982-01-21       Impact factor: 2.691

6.  Targeting of HIF-alpha to the von Hippel-Lindau ubiquitylation complex by O2-regulated prolyl hydroxylation.

Authors:  P Jaakkola; D R Mole; Y M Tian; M I Wilson; J Gielbert; S J Gaskell; A von Kriegsheim; H F Hebestreit; M Mukherji; C J Schofield; P H Maxwell; C W Pugh; P J Ratcliffe
Journal:  Science       Date:  2001-04-05       Impact factor: 47.728

7.  Purification and characterization of clavaminate synthase from Streptomyces clavuligerus: an unusual oxidative enzyme in natural product biosynthesis.

Authors:  S P Salowe; E N Marsh; C A Townsend
Journal:  Biochemistry       Date:  1990-07-10       Impact factor: 3.162

8.  X-ray crystal structure of Escherichia coli taurine/alpha-ketoglutarate dioxygenase complexed to ferrous iron and substrates.

Authors:  Jonathan M Elkins; Matthew J Ryle; Ian J Clifton; Julie C Dunning Hotopp; John S Lloyd; Nicolai I Burzlaff; Jack E Baldwin; Robert P Hausinger; Peter L Roach
Journal:  Biochemistry       Date:  2002-04-23       Impact factor: 3.162

9.  Oxidative demethylation by Escherichia coli AlkB directly reverts DNA base damage.

Authors:  Sarah C Trewick; Timothy F Henshaw; Robert P Hausinger; Tomas Lindahl; Barbara Sedgwick
Journal:  Nature       Date:  2002-09-12       Impact factor: 49.962

10.  Studies on the lysyl hydroxylase reaction. I. Initial velocity kinetics and related aspects.

Authors:  U Puistola; T M Turpeenniemi-Hujanen; R Myllylä; K I Kivirikko
Journal:  Biochim Biophys Acta       Date:  1980-01-11
View more
  17 in total

1.  Evidence that oxidative dephosphorylation by the nonheme Fe(II), α-ketoglutarate:UMP oxygenase occurs by stereospecific hydroxylation.

Authors:  Anwesha Goswami; Xiaodong Liu; Wenlong Cai; Thomas P Wyche; Tim S Bugni; Maïa Meurillon; Suzanne Peyrottes; Christian Perigaud; Koichi Nonaka; Jürgen Rohr; Steven G Van Lanen
Journal:  FEBS Lett       Date:  2017-01-25       Impact factor: 4.124

Review 2.  Mechanisms of Bacterial Tolerance and Persistence in the Gastrointestinal and Respiratory Environments.

Authors:  R Trastoy; T Manso; L Fernández-García; L Blasco; A Ambroa; M L Pérez Del Molino; G Bou; R García-Contreras; T K Wood; M Tomás
Journal:  Clin Microbiol Rev       Date:  2018-08-01       Impact factor: 26.132

3.  Uncoupled O2-activation in the human HIF-asparaginyl hydroxylase, FIH, does not produce reactive oxygen species.

Authors:  Evren Saban; Shannon C Flagg; Michael J Knapp
Journal:  J Inorg Biochem       Date:  2011-01-21       Impact factor: 4.155

4.  Mechanism of the C5 stereoinversion reaction in the biosynthesis of carbapenem antibiotics.

Authors:  Wei-chen Chang; Yisong Guo; Chen Wang; Susan E Butch; Amy C Rosenzweig; Amie K Boal; Carsten Krebs; J Martin Bollinger
Journal:  Science       Date:  2014-03-07       Impact factor: 47.728

5.  Substrate Promotes Productive Gas Binding in the α-Ketoglutarate-Dependent Oxygenase FIH.

Authors:  Cornelius Y Taabazuing; Justin Fermann; Scott Garman; Michael J Knapp
Journal:  Biochemistry       Date:  2016-01-05       Impact factor: 3.162

Review 6.  Spectroscopic analyses of 2-oxoglutarate-dependent oxygenases: TauD as a case study.

Authors:  Denis A Proshlyakov; John McCracken; Robert P Hausinger
Journal:  J Biol Inorg Chem       Date:  2016-11-03       Impact factor: 3.358

7.  Investigating inner-sphere reorganization via secondary kinetic isotope effects in the C-H cleavage reaction catalyzed by soybean lipoxygenase: tunneling in the substrate backbone as well as the transferred hydrogen.

Authors:  Matthew P Meyer; Judith P Klinman
Journal:  J Am Chem Soc       Date:  2010-12-30       Impact factor: 15.419

Review 8.  Understanding Biological Hydrogen Transfer Through the Lens of Temperature Dependent Kinetic Isotope Effects.

Authors:  Judith P Klinman; Adam R Offenbacher
Journal:  Acc Chem Res       Date:  2018-08-28       Impact factor: 22.384

9.  Mechanistic insights into the bifunctional non-heme iron oxygenase carbapenem synthase by active site saturation mutagenesis.

Authors:  Ryan M Phelan; Craig A Townsend
Journal:  J Am Chem Soc       Date:  2013-05-13       Impact factor: 15.419

Review 10.  Imposing function down a (cupin)-barrel: secondary structure and metal stereochemistry in the αKG-dependent oxygenases.

Authors:  John A Hangasky; Cornelius Y Taabazuing; Meaghan A Valliere; Michael J Knapp
Journal:  Metallomics       Date:  2013-04       Impact factor: 4.526

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.