Literature DB >> 17472346

An internal equilibrium preorganizes the enzyme-substrate complex for hydride tunneling in choline oxidase.

Fan Fan1, Giovanni Gadda.   

Abstract

The hydride transfer reaction catalyzed by choline oxidase under irreversible regime, i.e., at saturating oxygen, was shown in a recent study to occur quantum mechanically within a highly preorganized active site, with the reactive configuration for hydride tunneling being minimally affected by environmental vibrations of the reaction coordinate other than those affecting the distance between the alpha-carbon of the choline alkoxide substrate and the N(5) atom of the enzyme-bound flavin cofactor [Fan, F., and Gadda, G. (2005) J. Am. Chem. Soc. 127, 17954-17961]. In this study, we have determined the effects of pH and temperature on the substrate kinetic isotope effects with 1,2-[2H4]choline as substrate for choline oxidase at 0.2 mM oxygen to gain insights on the mechanism of hydride transfer under reversible catalytic regime. The data presented indicated that the kinetic complexity arising from the net flux through the reverse of the hydride transfer step changed with temperature, with the hydride transfer reaction becoming more reversible with increasing temperatures. After this kinetic complexity was accounted for, analyses of the kcat/Km and D(kcat/Km) values determined at 0.2 mM according to the Eyring and Arrhenius formalisms suggested that the quantum mechanical nature of the hydride transfer reaction is, not surprisingly, maintained during enzymatic catalysis under reversible regime. A comparison of the thermodynamic and kinetic parameters of the hydride transfer reaction under reversible and irreversible catalytic regimes showed that the enthalpies of activation (DeltaH++) were significantly larger in the reversible catalytic regime. This reflects the presence of an enthalpically unfavorable internal equilibrium of the enzyme-substrate Michaelis complex occurring prior to, and independently from, CH bond cleavage. Such an internal equilibrium is required to preorganize the enzyme-substrate complex for efficient quantum mechanical tunneling of the hydride ion from the substrate alpha-carbon to the flavin N(5) atom.

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Year:  2007        PMID: 17472346     DOI: 10.1021/bi700255v

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  8 in total

1.  Contribution of flavin covalent linkage with histidine 99 to the reaction catalyzed by choline oxidase.

Authors:  Osbourne Quaye; Sharonda Cowins; Giovanni Gadda
Journal:  J Biol Chem       Date:  2009-04-27       Impact factor: 5.157

2.  A 21st century revisionist's view at a turning point in enzymology.

Authors:  Zachary D Nagel; Judith P Klinman
Journal:  Nat Chem Biol       Date:  2009-08       Impact factor: 15.040

3.  Identification of a long-range protein network that modulates active site dynamics in extremophilic alcohol dehydrogenases.

Authors:  Zachary D Nagel; Shujian Cun; Judith P Klinman
Journal:  J Biol Chem       Date:  2013-03-22       Impact factor: 5.157

4.  An integrated model for enzyme catalysis emerges from studies of hydrogen tunneling.

Authors:  Judith P Klinman
Journal:  Chem Phys Lett       Date:  2009-03-26       Impact factor: 2.328

Review 5.  Hydrogen tunneling links protein dynamics to enzyme catalysis.

Authors:  Judith P Klinman; Amnon Kohen
Journal:  Annu Rev Biochem       Date:  2013       Impact factor: 23.643

6.  [18F]fluoromethyl-[1,2-2H4]-choline: a novel radiotracer for imaging choline metabolism in tumors by positron emission tomography.

Authors:  Julius Leyton; Graham Smith; Yongjun Zhao; Meg Perumal; Quang-De Nguyen; Edward Robins; Erik Arstad; Eric O Aboagye
Journal:  Cancer Res       Date:  2009-09-22       Impact factor: 12.701

7.  Active site hydrophobic residues impact hydrogen tunneling differently in a thermophilic alcohol dehydrogenase at optimal versus nonoptimal temperatures.

Authors:  Zachary D Nagel; Corey W Meadows; Ming Dong; Brian J Bahnson; Judith P Klinman
Journal:  Biochemistry       Date:  2012-05-08       Impact factor: 3.162

8.  Temperature-Independent Kinetic Isotope Effects as Evidence for a Marcus-like Model of Hydride Tunneling in Phosphite Dehydrogenase.

Authors:  Graeme W Howe; Wilfred A van der Donk
Journal:  Biochemistry       Date:  2019-10-07       Impact factor: 3.162

  8 in total

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