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Literature DB >> 20230003

Rapid visualization and large-scale profiling of bacterial lipoproteins with chemical reporters.

Kavita J Rangan¹, Yu-Ying Yang, Guillaume Charron, Howard C Hang.

Abstract

Lipoproteins are a largely uncharacterized class of proteins in bacteria. In this study, metabolic labeling of bacteria with fatty acid chemical reporters allowed rapid profiling of lipid-modified proteins. We identified many candidate lipoproteins in Escherichia coli and detected a novel modification on YjgF. This chemical approach should facilitate future characterization of lipoproteins.

Entities: Chemical Mutation Species

Mesh：

Substances：

Year: 2010 PMID： 20230003 PMCID： PMC3031127 DOI： 10.1021/ja101387b

Source DB: PubMed Journal: J Am Chem Soc ISSN： 0002-7863 Impact factor: 15.419

16 in total

1. A test case for structure-based functional assignment: the 1.2 A crystal structure of the yjgF gene product from Escherichia coli.

Authors: K Volz
Journal: Protein Sci Date: 1999-11 Impact factor: 6.725

2. T cell activation by lipopeptide antigens.

Authors: D Branch Moody; David C Young; Tan-Yun Cheng; Jean-Pierre Rosat; Carme Roura-Mir; Peter B O'Connor; Dirk M Zajonc; Andrew Walz; Marvin J Miller; Steven B Levery; Ian A Wilson; Catherine E Costello; Michael B Brenner
Journal: Science Date: 2004-01-23 Impact factor: 47.728

3. Activation of Escherichia coli prohaemolysin to the mature toxin by acyl carrier protein-dependent fatty acylation.

Authors: J P Issartel; V Koronakis; C Hughes
Journal: Nature Date: 1991-06-27 Impact factor: 49.962

4. YjgF is required for isoleucine biosynthesis when Salmonella enterica is grown on pyruvate medium.

Authors: Melissa R Christopherson; G E Schmitz; Diana M Downs
Journal: J Bacteriol Date: 2008-02-22 Impact factor: 3.490

5. Bioorthogonal chemical reporters for monitoring protein acetylation.

Authors: Yu-Ying Yang; Janice M Ascano; Howard C Hang
Journal: J Am Chem Soc Date: 2010-03-24 Impact factor: 15.419

6. Solution structure and functional ligand screening of HI0719, a highly conserved protein from bacteria to humans in the YjgF/YER057c/UK114 family.

Authors: Lisa Parsons; Nicklas Bonander; Edward Eisenstein; Michael Gilson; Visvaldas Kairys; John Orban
Journal: Biochemistry Date: 2003-01-14 Impact factor: 3.162

7. Structural studies of the Cpx pathway activator NlpE on the outer membrane of Escherichia coli.

Authors: Yu Hirano; Md Motarab Hossain; Kazuki Takeda; Hajime Tokuda; Kunio Miki
Journal: Structure Date: 2007-08 Impact factor: 5.006

8. Site-specific N-terminal labelling of proteins in vitro and in vivo using N-myristoyl transferase and bioorthogonal ligation chemistry.

Authors: William P Heal; Sasala R Wickramasinghe; Paul W Bowyer; Anthony A Holder; Deborah F Smith; Robin J Leatherbarrow; Edward W Tate
Journal: Chem Commun (Camb) Date: 2007-11-13 Impact factor: 6.222

9. A database of bacterial lipoproteins (DOLOP) with functional assignments to predicted lipoproteins.

Authors: M Madan Babu; M Leena Priya; A Tamil Selvan; Martin Madera; Julian Gough; L Aravind; K Sankaran
Journal: J Bacteriol Date: 2006-04 Impact factor: 3.490

10. The crystal structure of Escherichia coli TdcF, a member of the highly conserved YjgF/YER057c/UK114 family.

Authors: Julia D Burman; Clare E M Stevenson; R Gary Sawers; David M Lawson
Journal: BMC Struct Biol Date: 2007-05-16

28 in total

1. Multifunctional protein labeling via enzymatic N-terminal tagging and elaboration by click chemistry.

Authors: William P Heal; Megan H Wright; Emmanuelle Thinon; Edward W Tate
Journal: Nat Protoc Date: 2011-12-22 Impact factor: 13.491

2. Proteomic analysis of fatty-acylated proteins in mammalian cells with chemical reporters reveals S-acylation of histone H3 variants.

Authors: John P Wilson; Anuradha S Raghavan; Yu-Ying Yang; Guillaume Charron; Howard C Hang
Journal: Mol Cell Proteomics Date: 2010-11-14 Impact factor: 5.911

Rapid visualization and large-scale profiling of bacterial lipoproteins with chemical reporters.

1. A test case for structure-based functional assignment: the 1.2 A crystal structure of the yjgF gene product from Escherichia coli.

2. T cell activation by lipopeptide antigens.

3. Activation of Escherichia coli prohaemolysin to the mature toxin by acyl carrier protein-dependent fatty acylation.

4. YjgF is required for isoleucine biosynthesis when Salmonella enterica is grown on pyruvate medium.

5. Bioorthogonal chemical reporters for monitoring protein acetylation.

6. Solution structure and functional ligand screening of HI0719, a highly conserved protein from bacteria to humans in the YjgF/YER057c/UK114 family.

7. Structural studies of the Cpx pathway activator NlpE on the outer membrane of Escherichia coli.

8. Site-specific N-terminal labelling of proteins in vitro and in vivo using N-myristoyl transferase and bioorthogonal ligation chemistry.

9. A database of bacterial lipoproteins (DOLOP) with functional assignments to predicted lipoproteins.

10. The crystal structure of Escherichia coli TdcF, a member of the highly conserved YjgF/YER057c/UK114 family.

1. Multifunctional protein labeling via enzymatic N-terminal tagging and elaboration by click chemistry.

2. Proteomic analysis of fatty-acylated proteins in mammalian cells with chemical reporters reveals S-acylation of histone H3 variants.

3. Comparative analysis of cleavable azobenzene-based affinity tags for bioorthogonal chemical proteomics.

Review 4. Exploring protein lipidation with chemical biology.

Review 5. Chemical reporters for exploring protein acylation.

Review 6. Illumination of growth, division and secretion by metabolic labeling of the bacterial cell surface.

7. Bioorthogonal chemical reporters for analyzing protein lipidation and lipid trafficking.

8. A multifunctional enzyme is involved in bacterial ether lipid biosynthesis.

Review 9. Exterior design: strategies for redecorating the bacterial surface with small molecules.

10. Copper-Catalyzed Azide-Alkyne Click Chemistry for Bioconjugation.