Literature DB >> 20096582

Many families of C. elegans microRNAs are not essential for development or viability.

Ezequiel Alvarez-Saavedra1, H Robert Horvitz.   

Abstract

MicroRNAs (miRNAs) are approximately 23 nt regulatory RNAs that posttranscriptionally inhibit the functions of protein-coding mRNAs. We previously found that most C. elegans miRNAs are individually not essential for development or viability and proposed that paralogous miRNAs might often function redundantly. To test this hypothesis, we generated mutant C. elegans strains that each lack multiple or all members of one of 15 miRNA families. Mutants for 12 of these families did not display strong synthetic abnormalities, suggesting that these miRNA families have subtle roles during development. By contrast, mutants deleted for all members of the mir-35 or mir-51 families died as embryos or early larvae, and mutants deleted for four members of the mir-58 family showed defects in locomotion, body size, and egg laying and an inability to form dauer larvae. Our findings indicate that the regulatory functions of most individual miRNAs and most individual families of miRNAs related in sequence are not critical for development or viability. Conversely, because in some cases miRNA family members act redundantly, our findings emphasize the importance of determining miRNA function in the absence of miRNAs related in sequence. Copyright 2010 Elsevier Ltd. All rights reserved.

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Year:  2010        PMID: 20096582      PMCID: PMC2844791          DOI: 10.1016/j.cub.2009.12.051

Source DB:  PubMed          Journal:  Curr Biol        ISSN: 0960-9822            Impact factor:   10.834


  35 in total

1.  The microRNAs of Caenorhabditis elegans.

Authors:  Lee P Lim; Nelson C Lau; Earl G Weinstein; Aliaa Abdelhakim; Soraya Yekta; Matthew W Rhoades; Christopher B Burge; David P Bartel
Journal:  Genes Dev       Date:  2003-04-02       Impact factor: 11.361

2.  The microRNA Registry.

Authors:  Sam Griffiths-Jones
Journal:  Nucleic Acids Res       Date:  2004-01-01       Impact factor: 16.971

3.  The 21-nucleotide let-7 RNA regulates developmental timing in Caenorhabditis elegans.

Authors:  B J Reinhart; F J Slack; M Basson; A E Pasquinelli; J C Bettinger; A E Rougvie; H R Horvitz; G Ruvkun
Journal:  Nature       Date:  2000-02-24       Impact factor: 49.962

4.  Specification of male development in Caenorhabditis elegans: the fem genes.

Authors:  J Kimble; L Edgar; D Hirsh
Journal:  Dev Biol       Date:  1984-09       Impact factor: 3.582

5.  Egg-laying defective mutants of the nematode Caenorhabditis elegans.

Authors:  C Trent; N Tsuing; H R Horvitz
Journal:  Genetics       Date:  1983-08       Impact factor: 4.562

6.  An abundant class of tiny RNAs with probable regulatory roles in Caenorhabditis elegans.

Authors:  N C Lau; L P Lim; E G Weinstein; D P Bartel
Journal:  Science       Date:  2001-10-26       Impact factor: 47.728

7.  Genome-scale spatiotemporal analysis of Caenorhabditis elegans microRNA promoter activity.

Authors:  Natalia J Martinez; Maria C Ow; John S Reece-Hoyes; M Inmaculada Barrasa; Victor R Ambros; Albertha J M Walhout
Journal:  Genome Res       Date:  2008-11-03       Impact factor: 9.043

8.  Molecular architecture of a miRNA-regulated 3' UTR.

Authors:  Dominic Didiano; Oliver Hobert
Journal:  RNA       Date:  2008-05-07       Impact factor: 4.942

9.  The genetics of Caenorhabditis elegans.

Authors:  S Brenner
Journal:  Genetics       Date:  1974-05       Impact factor: 4.562

Review 10.  TGF-beta signaling.

Authors:  Cathy Savage-Dunn
Journal:  WormBook       Date:  2005-09-09
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  165 in total

Review 1.  From microRNAs to targets: pathway discovery in cell fate transitions.

Authors:  Deepa Subramanyam; Robert Blelloch
Journal:  Curr Opin Genet Dev       Date:  2011-06-01       Impact factor: 5.578

2.  Pervasive and cooperative deadenylation of 3'UTRs by embryonic microRNA families.

Authors:  Edlyn Wu; Caroline Thivierge; Mathieu Flamand; Geraldine Mathonnet; Ajay A Vashisht; James Wohlschlegel; Marc R Fabian; Nahum Sonenberg; Thomas F Duchaine
Journal:  Mol Cell       Date:  2010-11-24       Impact factor: 17.970

Review 3.  Evolution of microRNA diversity and regulation in animals.

Authors:  Eugene Berezikov
Journal:  Nat Rev Genet       Date:  2011-11-18       Impact factor: 53.242

4.  A genome-wide transgenic resource for conditional expression of Drosophila microRNAs.

Authors:  Fernando Bejarano; Diane Bortolamiol-Becet; Qi Dai; Kailiang Sun; Abil Saj; Yu-Ting Chou; David R Raleigh; Kevin Kim; Jian-Quan Ni; Hong Duan; Jr-Shiuan Yang; Tudor A Fulga; David Van Vactor; Norbert Perrimon; Eric C Lai
Journal:  Development       Date:  2012-06-28       Impact factor: 6.868

5.  Casein kinase II promotes target silencing by miRISC through direct phosphorylation of the DEAD-box RNA helicase CGH-1.

Authors:  Amelia F Alessi; Vishal Khivansara; Ting Han; Mallory A Freeberg; James J Moresco; Patricia G Tu; Eric Montoye; John R Yates; Xantha Karp; John K Kim
Journal:  Proc Natl Acad Sci U S A       Date:  2015-12-15       Impact factor: 11.205

Review 6.  The roles of microRNAs in mouse development.

Authors:  Brian DeVeale; Jennifer Swindlehurst-Chan; Robert Blelloch
Journal:  Nat Rev Genet       Date:  2021-01-15       Impact factor: 53.242

7.  mir-35 is involved in intestine cell G1/S transition and germ cell proliferation in C. elegans.

Authors:  Min Liu; Pengpeng Liu; Li Zhang; Qingchun Cai; Ge Gao; Wenxia Zhang; Zuoyan Zhu; Dong Liu; Qichang Fan
Journal:  Cell Res       Date:  2011-06-21       Impact factor: 25.617

Review 8.  A growing molecular toolbox for the functional analysis of microRNAs in Caenorhabditis elegans.

Authors:  Jeanyoung Jo; Aurora Esquela-Kerscher
Journal:  Brief Funct Genomics       Date:  2011-05-29       Impact factor: 4.241

Review 9.  The biological functions of miRNAs: lessons from in vivo studies.

Authors:  Joana A Vidigal; Andrea Ventura
Journal:  Trends Cell Biol       Date:  2014-12-04       Impact factor: 20.808

10.  A quantitative model of normal Caenorhabditis elegans embryogenesis and its disruption after stress.

Authors:  Julia L Richards; Amanda L Zacharias; Travis Walton; Joshua T Burdick; John Isaac Murray
Journal:  Dev Biol       Date:  2012-12-07       Impact factor: 3.582

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