Literature DB >> 25484347

The biological functions of miRNAs: lessons from in vivo studies.

Joana A Vidigal1, Andrea Ventura2.   

Abstract

Despite their clear importance as a class of regulatory molecules, pinpointing the relevance of individual miRNAs has been challenging. Studies querying miRNA functions by overexpressing or silencing specific miRNAs have yielded data that are often at odds with those collected from loss-of-functions models. In addition, knockout studies suggest that many conserved miRNAs are dispensable for animal development or viability. In this review, we discuss these observations in the context of our current knowledge of miRNA biology and review the evidence implicating miRNA-mediated gene regulation in the mechanisms that ensure biological robustness.
Copyright © 2014 Elsevier Ltd. All rights reserved.

Entities:  

Keywords:  animal models; buffering; miRNAs; network motifs; paralogs

Mesh:

Substances:

Year:  2014        PMID: 25484347      PMCID: PMC4344861          DOI: 10.1016/j.tcb.2014.11.004

Source DB:  PubMed          Journal:  Trends Cell Biol        ISSN: 0962-8924            Impact factor:   20.808


  141 in total

1.  The widespread impact of mammalian MicroRNAs on mRNA repression and evolution.

Authors:  Kyle Kai-How Farh; Andrew Grimson; Calvin Jan; Benjamin P Lewis; Wendy K Johnston; Lee P Lim; Christopher B Burge; David P Bartel
Journal:  Science       Date:  2005-11-24       Impact factor: 47.728

2.  Combinatorial microRNA target predictions.

Authors:  Azra Krek; Dominic Grün; Matthew N Poy; Rachel Wolf; Lauren Rosenberg; Eric J Epstein; Philip MacMenamin; Isabelle da Piedade; Kristin C Gunsalus; Markus Stoffel; Nikolaus Rajewsky
Journal:  Nat Genet       Date:  2005-04-03       Impact factor: 38.330

Review 3.  Canalization of development by microRNAs.

Authors:  Eran Hornstein; Noam Shomron
Journal:  Nat Genet       Date:  2006-06       Impact factor: 38.330

4.  Noise propagation in gene networks.

Authors:  Juan M Pedraza; Alexander van Oudenaarden
Journal:  Science       Date:  2005-03-25       Impact factor: 47.728

5.  A microRNA mediates EGF receptor signaling and promotes photoreceptor differentiation in the Drosophila eye.

Authors:  Xin Li; Richard W Carthew
Journal:  Cell       Date:  2005-12-29       Impact factor: 41.582

6.  Systematic discovery of regulatory motifs in human promoters and 3' UTRs by comparison of several mammals.

Authors:  Xiaohui Xie; Jun Lu; E J Kulbokas; Todd R Golub; Vamsi Mootha; Kerstin Lindblad-Toh; Eric S Lander; Manolis Kellis
Journal:  Nature       Date:  2005-02-27       Impact factor: 49.962

7.  LIN-12/Notch activation leads to microRNA-mediated down-regulation of Vav in C. elegans.

Authors:  Andrew S Yoo; Iva Greenwald
Journal:  Science       Date:  2005-10-20       Impact factor: 47.728

8.  Zebrafish MiR-430 promotes deadenylation and clearance of maternal mRNAs.

Authors:  Antonio J Giraldez; Yuichiro Mishima; Jason Rihel; Russell J Grocock; Stijn Van Dongen; Kunio Inoue; Anton J Enright; Alexander F Schier
Journal:  Science       Date:  2006-02-16       Impact factor: 47.728

9.  Principles of microRNA-target recognition.

Authors:  Julius Brennecke; Alexander Stark; Robert B Russell; Stephen M Cohen
Journal:  PLoS Biol       Date:  2005-03       Impact factor: 8.029

10.  The expansion of the metazoan microRNA repertoire.

Authors:  Jana Hertel; Manuela Lindemeyer; Kristin Missal; Claudia Fried; Andrea Tanzer; Christoph Flamm; Ivo L Hofacker; Peter F Stadler
Journal:  BMC Genomics       Date:  2006-02-15       Impact factor: 3.969

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  185 in total

Review 1.  The impact of microRNA gene regulation on the survival and function of mature cell types in the eye.

Authors:  Thomas R Sundermeier; Krzysztof Palczewski
Journal:  FASEB J       Date:  2015-09-23       Impact factor: 5.191

2.  Comprehensive proteomic profiling identifies the androgen receptor axis and other signaling pathways as targets of microRNAs suppressed in metastatic prostate cancer.

Authors:  C Coarfa; W Fiskus; V K Eedunuri; K Rajapakshe; C Foley; S A Chew; S S Shah; C Geng; J Shou; J S Mohamed; B W O'Malley; N Mitsiades
Journal:  Oncogene       Date:  2015-09-14       Impact factor: 9.867

3.  Protective effects of bovine milk exosomes against oxidative stress in IEC-6 cells.

Authors:  Lanfang Wang; Zhexi Shi; Xinyan Wang; Shu Mu; Xiaoyan Xu; Li Shen; Ping Li
Journal:  Eur J Nutr       Date:  2020-04-23       Impact factor: 5.614

4.  Loss of motoneuron-specific microRNA-218 causes systemic neuromuscular failure.

Authors:  Neal D Amin; Ge Bai; Jason R Klug; Dario Bonanomi; Matthew T Pankratz; Wesley D Gifford; Christopher A Hinckley; Matthew J Sternfeld; Shawn P Driscoll; Bertha Dominguez; Kuo-Fen Lee; Xin Jin; Samuel L Pfaff
Journal:  Science       Date:  2015-12-18       Impact factor: 47.728

Review 5.  Chromium exposure disrupts chromatin architecture upsetting the mechanisms that regulate transcription.

Authors:  Hesbon A Zablon; Andrew VonHandorf; Alvaro Puga
Journal:  Exp Biol Med (Maywood)       Date:  2019-04-01

6.  Altered microRNA expression patterns during the initiation and promotion stages of neonatal diethylstilbestrol-induced dysplasia/neoplasia in the hamster (Mesocricetus auratus) uterus.

Authors:  Ramesh Padmanabhan; Isabel R Hendry; Jennifer R Knapp; Bin Shuai; William J Hendry
Journal:  Cell Biol Toxicol       Date:  2017-03-06       Impact factor: 6.691

7.  MicroRNA-31 initiates lung tumorigenesis and promotes mutant KRAS-driven lung cancer.

Authors:  Mick D Edmonds; Kelli L Boyd; Tamara Moyo; Ramkrishna Mitra; Robert Duszynski; Maria Pia Arrate; Xi Chen; Zhongming Zhao; Timothy S Blackwell; Thomas Andl; Christine M Eischen
Journal:  J Clin Invest       Date:  2015-12-14       Impact factor: 14.808

8.  Mitochondrial Activity in Human White Adipocytes Is Regulated by the Ubiquitin Carrier Protein 9/microRNA-30a Axis.

Authors:  Eun Hee Koh; Yong Chen; David A Bader; Mark P Hamilton; Bin He; Brian York; Shingo Kajimura; Sean E McGuire; Sean M Hartig
Journal:  J Biol Chem       Date:  2016-10-10       Impact factor: 5.157

Review 9.  MicroRNAs and Transplantation.

Authors:  Zahraa Khan; Manikkam Suthanthiran; Thangamani Muthukumar
Journal:  Clin Lab Med       Date:  2018-12-22       Impact factor: 1.935

10.  Ablation of miR-10b Suppresses Oncogene-Induced Mammary Tumorigenesis and Metastasis and Reactivates Tumor-Suppressive Pathways.

Authors:  Jongchan Kim; Ashley N Siverly; Dahu Chen; Min Wang; Yuan Yuan; Yumeng Wang; Hyemin Lee; Jinsong Zhang; William J Muller; Han Liang; Boyi Gan; Xianbin Yang; Yutong Sun; M James You; Li Ma
Journal:  Cancer Res       Date:  2016-08-28       Impact factor: 12.701

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