Literature DB >> 15248761

Hierarchical map of protein unfolding and refolding at thermal equilibrium revealed by wide-angle X-ray scattering.

Mitsuhiro Hirai1, Masaharu Koizumi, Tomohiro Hayakawa, Hiroshi Takahashi, Satoru Abe, Harutaka Hirai, Keiko Miura, Katsuaki Inoue.   

Abstract

Hierarchical features of the thermal unfolding-refolding structural transition of hen egg white lysozyme (HEWL) have been studied in the temperature range from 13 to 84 degrees C by using high-resolution wide-angle X-ray scattering (WAXS) measurements at a third-generation synchrotron source. We have gathered high-statistic WAXS data of the reversible unfolding-refolding process of HEWL in the q range from approximately 0.05 to approximately 3 A(-1) [q = (4pi/lambda) sin(theta/2), where theta is the scattering angle and lambda the wavelength]. This measured q range corresponds to the spatial distance from approximately 2 to approximately 125 A, which covers all hierarchical structures of a small globular protein such as HEWL, namely, tertiary, domain, and secondary structures. Because of this, we have found that the pH dependence of the thermal structural transition of HEWL is well characterized by the various hierarchical levels and the transition concurrence among them. In this report, we present a new hierarchical map depiction of unfolding-refolding transitions. Using scattering with various ranges of q values, we determine the molar ratio of native-like protein structure defined by the data in each range, thus producing a map of the amount of native-like structure as a function of the hierarchical level or resolution. This map can visualize a detailed feature of the unfolding-refolding transition of a protein depending on various structural hierarchical levels; however, the exact meaning of the map will await sharpening by additional works.

Mesh:

Substances:

Year:  2004        PMID: 15248761     DOI: 10.1021/bi0499664

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  13 in total

1.  Kinetic asymmetry of subunit exchange of homooligomeric protein as revealed by deuteration-assisted small-angle neutron scattering.

Authors:  Masaaki Sugiyama; Eiji Kurimoto; Hirokazu Yagi; Kazuhiro Mori; Toshiharu Fukunaga; Mitsuhiro Hirai; Giuseppe Zaccai; Koichi Kato
Journal:  Biophys J       Date:  2011-10-19       Impact factor: 4.033

2.  Consistent picture of the reversible thermal unfolding of hen egg-white lysozyme from experiment and molecular dynamics.

Authors:  Filip Meersman; Canan Atilgan; Andrew J Miles; Reto Bader; Weifeng Shang; André Matagne; B A Wallace; Michel H J Koch
Journal:  Biophys J       Date:  2010-10-06       Impact factor: 4.033

3.  Dynamics of apomyoglobin in the alpha-to-beta transition and of partially unfolded aggregated protein.

Authors:  E Fabiani; A M Stadler; D Madern; M M Koza; M Tehei; M Hirai; G Zaccai
Journal:  Eur Biophys J       Date:  2008-10-14       Impact factor: 1.733

4.  Change of dynamics of raft-model membrane induced by amyloid-β protein binding.

Authors:  Mitushiro Hirai; Ryota Kimura; Kazuki Takeuchi; Masaaki Sugiyama; Kouji Kasahara; Noboru Ohta; Bela Farago; Andreas Stadler; Giuseppe Zaccai
Journal:  Eur Phys J E Soft Matter       Date:  2013-07-16       Impact factor: 1.890

5.  Determinants of 14-3-3σ protein dimerization and function in drug and radiation resistance.

Authors:  Zhaomin Li; Hui Peng; Li Qin; Jing Qi; Xiaobing Zuo; Jing-Yuan Liu; Jian-Ting Zhang
Journal:  J Biol Chem       Date:  2013-09-16       Impact factor: 5.157

Review 6.  X-ray scattering combined with coordinate-based analyses for applications in natural and artificial photosynthesis.

Authors:  David M Tiede; Kristy L Mardis; Xiaobing Zuo
Journal:  Photosynth Res       Date:  2009 Nov-Dec       Impact factor: 3.573

7.  Direct Evidence for the Effect of Glycerol on Protein Hydration and Thermal Structural Transition.

Authors:  Mitsuhiro Hirai; Satoshi Ajito; Masaaki Sugiyama; Hiroki Iwase; Shin-Ichi Takata; Nobutaka Shimizu; Noriyuki Igarashi; Anne Martel; Lionel Porcar
Journal:  Biophys J       Date:  2018-07-17       Impact factor: 4.033

8.  Characterization of proteins with wide-angle X-ray solution scattering (WAXS).

Authors:  Lee Makowski
Journal:  J Struct Funct Genomics       Date:  2010-01-05

9.  Critical structural fluctuations of proteins upon thermal unfolding challenge the Lindemann criterion.

Authors:  Marina Katava; Guillaume Stirnemann; Marco Zanatta; Simone Capaccioli; Maria Pachetti; K L Ngai; Fabio Sterpone; Alessandro Paciaroni
Journal:  Proc Natl Acad Sci U S A       Date:  2017-08-14       Impact factor: 11.205

10.  Structure of liposome encapsulating proteins characterized by X-ray scattering and shell-modeling.

Authors:  Mitsuhiro Hirai; Ryota Kimura; Kazuki Takeuchi; Yoshihiko Hagiwara; Rika Kawai-Hirai; Noboru Ohta; Noriyuki Igarashi; Nobutaka Shimuzu
Journal:  J Synchrotron Radiat       Date:  2013-09-26       Impact factor: 2.616

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.