Literature DB >> 22385864

Multi-wavelength anomalous diffraction using medium-angle X-ray solution scattering (MADMAX).

L Makowski1, J Bardhan, D Gore, D J Rodi, R F Fischetti.   

Abstract

Proteins are dynamic molecules whose function in virtually all biological processes requires conformational motion. Direct experimental probes of protein structure in solution are needed to characterize these motions. Anomalous scattering from proteins in solution has the potential to act as a precise molecular ruler to determine the positions of specific chemical groups or atoms within proteins under conditions in which structural changes can take place free from the constraints of crystal contacts. In solution, anomalous diffraction has two components: a set of cross-terms that depend on the relative location of the anomalous centers and the rest of the protein, and a set of pure anomalous terms that depend on the distances between the anomalous centers. The cross-terms are demonstrated here to be observable and to provide direct information about the distance between the anomalous center and the center of mass of the protein. The second set of terms appears immeasurably small in the context of current experimental capabilities. Here, we outline the theory underlying anomalous scattering from proteins in solution, predict the anomalous differences expected on the basis of atomic coordinate sets, and demonstrate the measurement of anomalous differences at the iron edge for solutions of myoglobin and hemoglobin. Copyright Â
© 2012 Biophysical Society. Published by Elsevier Inc. All rights reserved.

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Year:  2012        PMID: 22385864      PMCID: PMC3283801          DOI: 10.1016/j.bpj.2012.01.026

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  17 in total

1.  Counterion distribution around DNA probed by solution X-ray scattering.

Authors:  R Das; T T Mills; L W Kwok; G S Maskel; I S Millett; S Doniach; K D Finkelstein; D Herschlag; L Pollack
Journal:  Phys Rev Lett       Date:  2003-05-08       Impact factor: 9.161

2.  Structure-function relations in hemoglobin as determined by x-ray absorption spectroscopy.

Authors:  P Eisenberger; R G Shulman; G S Brown; S Ogawa
Journal:  Proc Natl Acad Sci U S A       Date:  1976-02       Impact factor: 11.205

3.  Anomalous small angle x-ray scattering determination of ion distribution around a polyelectrolyte biopolymer in salt solution.

Authors:  Ferenc Horkay; Anne Marie Hecht; Cyrille Rochas; Peter J Basser; Erik Geissler
Journal:  J Chem Phys       Date:  2006-12-21       Impact factor: 3.488

4.  Molecular crowding inhibits intramolecular breathing motions in proteins.

Authors:  Lee Makowski; Diane J Rodi; Suneeta Mandava; David D L Minh; David B Gore; Robert F Fischetti
Journal:  J Mol Biol       Date:  2007-08-17       Impact factor: 5.469

5.  A rapid coarse residue-based computational method for x-ray solution scattering characterization of protein folds and multiple conformational states of large protein complexes.

Authors:  Sichun Yang; Sanghyun Park; Lee Makowski; Benoît Roux
Journal:  Biophys J       Date:  2009-06-03       Impact factor: 4.033

6.  Simulated x-ray scattering of protein solutions using explicit-solvent models.

Authors:  Sanghyun Park; Jaydeep P Bardhan; Benoît Roux; Lee Makowski
Journal:  J Chem Phys       Date:  2009-04-07       Impact factor: 3.488

7.  SoftWAXS: a computational tool for modeling wide-angle X-ray solution scattering from biomolecules.

Authors:  Jaydeep Bardhan; Sanghyun Park; Lee Makowski
Journal:  J Appl Crystallogr       Date:  2009-09-08       Impact factor: 3.304

8.  Configuration of the four iron atoms in dissolved human hemoglobin as studied by anomalous dispersion.

Authors:  H B Stuhrmann; H Notbohm
Journal:  Proc Natl Acad Sci U S A       Date:  1981-10       Impact factor: 11.205

9.  Characterization of proteins with wide-angle X-ray solution scattering (WAXS).

Authors:  Lee Makowski
Journal:  J Struct Funct Genomics       Date:  2010-01-05

10.  Selenomethionyl proteins produced for analysis by multiwavelength anomalous diffraction (MAD): a vehicle for direct determination of three-dimensional structure.

Authors:  W A Hendrickson; J R Horton; D M LeMaster
Journal:  EMBO J       Date:  1990-05       Impact factor: 11.598

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  3 in total

Review 1.  Emerging applications of small angle solution scattering in structural biology.

Authors:  Barnali N Chaudhuri
Journal:  Protein Sci       Date:  2015-02-12       Impact factor: 6.725

2.  Uniqueness of models from small-angle scattering data: the impact of a hydration shell and complementary NMR restraints.

Authors:  Henry S Kim; Frank Gabel
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2015-01-01

Review 3.  Investigating increasingly complex macromolecular systems with small-angle X-ray scattering.

Authors:  Bente Vestergaard; Zehra Sayers
Journal:  IUCrJ       Date:  2014-10-21       Impact factor: 4.769

  3 in total

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