Literature DB >> 20025794

Single-particle reconstruction of biological macromolecules in electron microscopy--30 years.

Joachim Frank1.   

Abstract

This essay gives the autho's personal account on the development of concepts underlying single-particle reconstruction, a technique in electron microscopy of macromolecular assemblies with a remarkable record of achievements as of late. The ribosome proved to be an ideal testing ground for the development of specimen preparation methods, cryo-EM techniques, and algorithms, with discoveries along the way as a rich reward. Increasingly, cryo-EM and single-particle reconstruction, in combination with classification techniques, is revealing dynamic information on functional molecular machines uninhibited by molecular contacts.

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Year:  2009        PMID: 20025794      PMCID: PMC2844734          DOI: 10.1017/S0033583509990059

Source DB:  PubMed          Journal:  Q Rev Biophys        ISSN: 0033-5835            Impact factor:   5.318


  81 in total

1.  Fitting atomic models into electron-microscopy maps.

Authors:  M G Rossmann
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2000-10

2.  Molecular structure determination by electron microscopy of unstained crystalline specimens.

Authors:  P N Unwin; R Henderson
Journal:  J Mol Biol       Date:  1975-05-25       Impact factor: 5.469

3.  A common-lines based method for determining orientations for N > 3 particle projections simultaneously.

Authors:  P A Penczek; J Zhu; J Frank
Journal:  Ultramicroscopy       Date:  1996-07       Impact factor: 2.689

4.  Visualization of a 4-helix bundle in the hepatitis B virus capsid by cryo-electron microscopy.

Authors:  J F Conway; N Cheng; A Zlotnick; P T Wingfield; S J Stahl; A C Steven
Journal:  Nature       Date:  1997-03-06       Impact factor: 49.962

5.  Motif detection in quantum noise-limited electron micrographs by cross-correlation.

Authors:  W O Saxton; J Frank
Journal:  Ultramicroscopy       Date:  1977-04       Impact factor: 2.689

Review 6.  Three-dimensional reconstruction of single particles from random and nonrandom tilt series.

Authors:  M Radermacher
Journal:  J Electron Microsc Tech       Date:  1988-08

7.  The characterization of structural variations within a crystal field.

Authors:  J Frank; W Chiu; L Degn
Journal:  Ultramicroscopy       Date:  1988       Impact factor: 2.689

8.  The correlation averaging of a regularly arranged bacterial cell envelope protein.

Authors:  W O Saxton; W Baumeister
Journal:  J Microsc       Date:  1982-08       Impact factor: 1.758

9.  Structural mechanism of SDS-induced enzyme activity of scorpion hemocyanin revealed by electron cryomicroscopy.

Authors:  Yao Cong; Qinfen Zhang; David Woolford; Thorsten Schweikardt; Htet Khant; Matthew Dougherty; Steven J Ludtke; Wah Chiu; Heinz Decker
Journal:  Structure       Date:  2009-05-13       Impact factor: 5.006

10.  Study of the structural dynamics of the E coli 70S ribosome using real-space refinement.

Authors:  Haixiao Gao; Jayati Sengupta; Mikel Valle; Andrei Korostelev; Narayanan Eswar; Scott M Stagg; Patrick Van Roey; Rajendra K Agrawal; Stephen C Harvey; Andrej Sali; Michael S Chapman; Joachim Frank
Journal:  Cell       Date:  2003-06-13       Impact factor: 41.582

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  58 in total

1.  Blotting protein complexes from native gels to electron microscopy grids.

Authors:  Roland Wilhelm Knispel; Christine Kofler; Marius Boicu; Wolfgang Baumeister; Stephan Nickell
Journal:  Nat Methods       Date:  2012-01-08       Impact factor: 28.547

2.  Cell-free protein synthesis and assembly on a biochip.

Authors:  Yael Heyman; Amnon Buxboim; Sharon G Wolf; Shirley S Daube; Roy H Bar-Ziv
Journal:  Nat Nanotechnol       Date:  2012-05-27       Impact factor: 39.213

3.  Biocrystallography: past, present, future.

Authors:  Richard Giegé; Claude Sauter
Journal:  HFSP J       Date:  2010-04-22

4.  The Ribosome Comes Alive.

Authors:  Joachim Frank
Journal:  Isr J Chem       Date:  2010-06-18       Impact factor: 3.333

Review 5.  Generalized single-particle cryo-EM--a historical perspective.

Authors:  Joachim Frank
Journal:  Microscopy (Oxf)       Date:  2015-11-12       Impact factor: 1.571

Review 6.  Modeling stochastic kinetics of molecular machines at multiple levels: from molecules to modules.

Authors:  Debashish Chowdhury
Journal:  Biophys J       Date:  2013-06-04       Impact factor: 4.033

7.  Expanding the ribosomal universe.

Authors:  Jonathan D Dinman; Terri Goss Kinzy
Journal:  Structure       Date:  2009-12-09       Impact factor: 5.006

8.  Flexible Fitting of Atomic Models into Cryo-EM Density Maps Guided by Helix Correspondences.

Authors:  Hang Dou; Derek W Burrows; Matthew L Baker; Tao Ju
Journal:  Biophys J       Date:  2017-06-20       Impact factor: 4.033

Review 9.  Determination of the ribosome structure to a resolution of 2.5 Å by single-particle cryo-EM.

Authors:  Zheng Liu; Cristina Gutierrez-Vargas; Jia Wei; Robert A Grassucci; Ming Sun; Noel Espina; Susan Madison-Antenucci; Liang Tong; Joachim Frank
Journal:  Protein Sci       Date:  2016-10-26       Impact factor: 6.725

10.  Deformed grids for single-particle cryo-electron microscopy of specimens exhibiting a preferred orientation.

Authors:  Ying Liu; Xing Meng; Zheng Liu
Journal:  J Struct Biol       Date:  2013-03-26       Impact factor: 2.867

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