Literature DB >> 19446530

Structural mechanism of SDS-induced enzyme activity of scorpion hemocyanin revealed by electron cryomicroscopy.

Yao Cong1, Qinfen Zhang, David Woolford, Thorsten Schweikardt, Htet Khant, Matthew Dougherty, Steven J Ludtke, Wah Chiu, Heinz Decker.   

Abstract

Phenoloxidases (POs) occur in all organisms and are involved in skin and hair coloring in mammals, and initiating melanization in wound healing. Mutation or overexpression of PO can cause albinism or melanoma, respectively. SDS can convert inactive PO and the oxygen carrier hemocyanin (Hc) into enzymatically active PO. Here we present single-particle cryo-EM maps at subnanometer resolution and pseudoatomic models of the 24-oligomeric Hc from scorpion Pandinus imperator in resting and SDS-activated states. Our structural analyses led to a plausible mechanism of Hc enzyme PO activation: upon SDS activation, the intrinsically flexible Hc domain I twists away from domains II and III in each subunit, exposing the entrance to the active site; this movement is stabilized by enhanced interhexamer and interdodecamer interactions, particularly in the central linker subunits. This mechanism could be applicable to other type 3 copper proteins, as the active site is highly conserved.

Entities:  

Mesh:

Substances:

Year:  2009        PMID: 19446530      PMCID: PMC2705691          DOI: 10.1016/j.str.2009.03.005

Source DB:  PubMed          Journal:  Structure        ISSN: 0969-2126            Impact factor:   5.006


  58 in total

1.  SDS-induced phenoloxidase activity of hemocyanins from Limulus polyphemus, Eurypelma californicum, and Cancer magister.

Authors:  H Decker; M Ryan; E Jaenicke; N Terwilliger
Journal:  J Biol Chem       Date:  2001-02-15       Impact factor: 5.157

2.  EMAN: semiautomated software for high-resolution single-particle reconstructions.

Authors:  S J Ludtke; P R Baldwin; W Chiu
Journal:  J Struct Biol       Date:  1999-12-01       Impact factor: 2.867

Review 3.  The prophenoloxidase-activating system in invertebrates.

Authors:  Lage Cerenius; Kenneth Söderhäll
Journal:  Immunol Rev       Date:  2004-04       Impact factor: 12.988

4.  The conformational state of polyphenol oxidase from field bean (Dolichos lablab) upon SDS and acid-pH activation.

Authors:  Santosh R Kanade; Beena Paul; A G Appu Rao; Lalitha R Gowda
Journal:  Biochem J       Date:  2006-05-01       Impact factor: 3.857

5.  Crystallographic evidence that the dinuclear copper center of tyrosinase is flexible during catalysis.

Authors:  Yasuyuki Matoba; Takanori Kumagai; Aiko Yamamoto; Hironari Yoshitsu; Masanori Sugiyama
Journal:  J Biol Chem       Date:  2006-01-25       Impact factor: 5.157

Review 6.  Similar enzyme activation and catalysis in hemocyanins and tyrosinases.

Authors:  Heinz Decker; Thorsten Schweikardt; Dorothea Nillius; Uwe Salzbrunn; Elmar Jaenicke; Felix Tuczek
Journal:  Gene       Date:  2007-05-13       Impact factor: 3.688

7.  Sodium dodecyl sulfate activation of a plant polyphenoloxidase. Effect of sodium dodecyl sulfate on enzymatic and physical characteristics of purified broad bean polyphenoloxidase.

Authors:  B M Moore; W H Flurkey
Journal:  J Biol Chem       Date:  1990-03-25       Impact factor: 5.157

8.  Comparison of 4 X 6-meric hemocyanins from three different arthropods using computer alignment and correspondence analysis.

Authors:  M M Bijlholt; M G van Heel; E F van Bruggen
Journal:  J Mol Biol       Date:  1982-10-15       Impact factor: 5.469

9.  Switch between tyrosinase and catecholoxidase activity of scorpion hemocyanin by allosteric effectors.

Authors:  Dorothea Nillius; Elmar Jaenicke; Heinz Decker
Journal:  FEBS Lett       Date:  2008-02-05       Impact factor: 4.124

10.  Refinement of protein structures by iterative comparative modeling and CryoEM density fitting.

Authors:  Maya Topf; Matthew L Baker; Marc A Marti-Renom; Wah Chiu; Andrej Sali
Journal:  J Mol Biol       Date:  2006-02-02       Impact factor: 5.469

View more
  24 in total

1.  4.0-A resolution cryo-EM structure of the mammalian chaperonin TRiC/CCT reveals its unique subunit arrangement.

Authors:  Yao Cong; Matthew L Baker; Joanita Jakana; David Woolford; Erik J Miller; Stefanie Reissmann; Ramya N Kumar; Alyssa M Redding-Johanson; Tanveer S Batth; Aindrila Mukhopadhyay; Steven J Ludtke; Judith Frydman; Wah Chiu
Journal:  Proc Natl Acad Sci U S A       Date:  2010-03-01       Impact factor: 11.205

2.  Site-directed mutagenesis of a tetrameric dandelion polyphenol oxidase (PPO-6) reveals the site of subunit interaction.

Authors:  Mareike E Dirks-Hofmeister; Jennifer K Inlow; Bruno M Moerschbacher
Journal:  Plant Mol Biol       Date:  2012-07-20       Impact factor: 4.076

Review 3.  Copper active sites in biology.

Authors:  Edward I Solomon; David E Heppner; Esther M Johnston; Jake W Ginsbach; Jordi Cirera; Munzarin Qayyum; Matthew T Kieber-Emmons; Christian H Kjaergaard; Ryan G Hadt; Li Tian
Journal:  Chem Rev       Date:  2014-03-03       Impact factor: 60.622

4.  Intensity-based skeletonization of CryoEM gray-scale images using a true segmentation-free algorithm.

Authors:  Kamal Al Nasr; Chunmei Liu; Mugizi Rwebangira; Legand Burge; Jing He
Journal:  IEEE/ACM Trans Comput Biol Bioinform       Date:  2013 Sep-Oct       Impact factor: 3.710

5.  Cryo-EM structure of a molluscan hemocyanin suggests its allosteric mechanism.

Authors:  Qinfen Zhang; Xinghong Dai; Yao Cong; Junjie Zhang; Dong-Hua Chen; Matthew T Dougherty; Jiangyong Wang; Steven J Ludtke; Michael F Schmid; Wah Chiu
Journal:  Structure       Date:  2013-04-02       Impact factor: 5.006

Review 6.  Single-particle reconstruction of biological macromolecules in electron microscopy--30 years.

Authors:  Joachim Frank
Journal:  Q Rev Biophys       Date:  2009-08       Impact factor: 5.318

7.  Unified data resource for cryo-EM.

Authors:  Catherine L Lawson
Journal:  Methods Enzymol       Date:  2010       Impact factor: 1.600

8.  Structural changes in a marine podovirus associated with release of its genome into Prochlorococcus.

Authors:  Xiangan Liu; Qinfen Zhang; Kazuyoshi Murata; Matthew L Baker; Matthew B Sullivan; Caroline Fu; Matthew T Dougherty; Michael F Schmid; Marcia S Osburne; Sallie W Chisholm; Wah Chiu
Journal:  Nat Struct Mol Biol       Date:  2010-06-13       Impact factor: 15.369

9.  Structure and Characterization of Eriphia verrucosa Hemocyanin.

Authors:  A Dolashki; M Radkova; E Todorovska; M Ivanov; S Stevanovic; L Molin; P Traldi; W Voelter; P Dolashka
Journal:  Mar Biotechnol (NY)       Date:  2015-08-11       Impact factor: 3.619

Review 10.  Membrane protein structure determination using cryo-electron tomography and 3D image averaging.

Authors:  Alberto Bartesaghi; Sriram Subramaniam
Journal:  Curr Opin Struct Biol       Date:  2009-07-29       Impact factor: 6.809

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.