Literature DB >> 21072331

The Ribosome Comes Alive.

Joachim Frank1.   

Abstract

This essay is a reflection on the ways the X-ray structures of the ribosome are helping in the interpretation of cryogenic electron microscopy (cryo-EM) density maps showing the translating ribosome in motion. Through advances in classification methods, cryo-EM and single-particle reconstruction methods have recently evolved to the point where they can yield an array of structures from a single sample ("story in a sample"), providing snapshots of an entire subprocess of translation, such as translocation or decoding.

Entities:  

Year:  2010        PMID: 21072331      PMCID: PMC2976627          DOI: 10.1002/ijch.201000010

Source DB:  PubMed          Journal:  Isr J Chem        ISSN: 0021-2148            Impact factor:   3.333


  29 in total

1.  The complete atomic structure of the large ribosomal subunit at 2.4 A resolution.

Authors:  N Ban; P Nissen; J Hansen; P B Moore; T A Steitz
Journal:  Science       Date:  2000-08-11       Impact factor: 47.728

2.  High resolution structure of the large ribosomal subunit from a mesophilic eubacterium.

Authors:  J Harms; F Schluenzen; R Zarivach; A Bashan; S Gat; I Agmon; H Bartels; F Franceschi; A Yonath
Journal:  Cell       Date:  2001-11-30       Impact factor: 41.582

3.  Locking and unlocking of ribosomal motions.

Authors:  Mikel Valle; Andrey Zavialov; Jayati Sengupta; Urmila Rawat; Måns Ehrenberg; Joachim Frank
Journal:  Cell       Date:  2003-07-11       Impact factor: 41.582

4.  The process of mRNA-tRNA translocation.

Authors:  Joachim Frank; Haixiao Gao; Jayati Sengupta; Ning Gao; Derek J Taylor
Journal:  Proc Natl Acad Sci U S A       Date:  2007-11-14       Impact factor: 11.205

5.  Flexible fitting of atomic structures into electron microscopy maps using molecular dynamics.

Authors:  Leonardo G Trabuco; Elizabeth Villa; Kakoli Mitra; Joachim Frank; Klaus Schulten
Journal:  Structure       Date:  2008-05       Impact factor: 5.006

6.  Coupling of ribosomal L1 stalk and tRNA dynamics during translation elongation.

Authors:  Jingyi Fei; Pallav Kosuri; Daniel D MacDougall; Ruben L Gonzalez
Journal:  Mol Cell       Date:  2008-05-09       Impact factor: 17.970

7.  Analysis of transient structures by cryo-microscopy combined with rapid mixing of spray droplets.

Authors:  J Berriman; N Unwin
Journal:  Ultramicroscopy       Date:  1994-12       Impact factor: 2.689

Review 8.  Single-particle reconstruction of biological macromolecules in electron microscopy--30 years.

Authors:  Joachim Frank
Journal:  Q Rev Biophys       Date:  2009-08       Impact factor: 5.318

9.  Monolithic microfluidic mixing-spraying devices for time-resolved cryo-electron microscopy.

Authors:  Zonghuan Lu; Tanvir R Shaikh; David Barnard; Xing Meng; Hisham Mohamed; Aymen Yassin; Carmen A Mannella; Rajendra K Agrawal; Toh-Ming Lu; Terence Wagenknecht
Journal:  J Struct Biol       Date:  2009-08-14       Impact factor: 2.867

10.  Visualization of the hybrid state of tRNA binding promoted by spontaneous ratcheting of the ribosome.

Authors:  Xabier Agirrezabala; Jianlin Lei; Julie L Brunelle; Rodrigo F Ortiz-Meoz; Rachel Green; Joachim Frank
Journal:  Mol Cell       Date:  2008-10-24       Impact factor: 17.970

View more
  5 in total

Review 1.  Generalized single-particle cryo-EM--a historical perspective.

Authors:  Joachim Frank
Journal:  Microscopy (Oxf)       Date:  2015-11-12       Impact factor: 1.571

2.  Story in a sample-the potential (and limitations) of cryo-electron microscopy applied to molecular machines.

Authors:  Joachim Frank
Journal:  Biopolymers       Date:  2013-11       Impact factor: 2.505

3.  Particle migration analysis in iterative classification of cryo-EM single-particle data.

Authors:  Bo Chen; Bingxin Shen; Joachim Frank
Journal:  J Struct Biol       Date:  2014-10-30       Impact factor: 2.867

Review 4.  Birth, life and death of nascent polypeptide chains.

Authors:  Sujata Jha; Anton A Komar
Journal:  Biotechnol J       Date:  2011-04-29       Impact factor: 4.677

Review 5.  Intermediate states during mRNA-tRNA translocation.

Authors:  Joachim Frank
Journal:  Curr Opin Struct Biol       Date:  2012-08-17       Impact factor: 6.809

  5 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.