Literature DB >> 20014084

Multiple base-recognition sites in a biological nanopore: two heads are better than one.

David Stoddart1, Giovanni Maglia, Ellina Mikhailova, Andrew J Heron, Hagan Bayley.   

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Year:  2010        PMID： 20014084      PMCID： PMC3128935          DOI： 10.1002/anie.200905483

Source DB:  PubMed          Journal:  Angew Chem Int Ed Engl        ISSN： 1433-7851            Impact factor:   15.336


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  11 in total

1.  Rapid nanopore discrimination between single polynucleotide molecules.

Authors:  A Meller; L Nivon; E Brandin; J Golovchenko; D Branton
Journal:  Proc Natl Acad Sci U S A       Date:  2000-02-01       Impact factor: 11.205

2.  Recognizing a single base in an individual DNA strand: a step toward DNA sequencing in nanopores.

Authors:  Nurit Ashkenasy; Jorge Sánchez-Quesada; Hagan Bayley; M Reza Ghadiri
Journal:  Angew Chem Int Ed Engl       Date:  2005-02-18       Impact factor: 15.336

3.  Single-nucleotide discrimination in immobilized DNA oligonucleotides with a biological nanopore.

Authors:  David Stoddart; Andrew J Heron; Ellina Mikhailova; Giovanni Maglia; Hagan Bayley
Journal:  Proc Natl Acad Sci U S A       Date:  2009-04-20       Impact factor: 11.205

4.  Characterization of individual polynucleotide molecules using a membrane channel.

Authors:  J J Kasianowicz; E Brandin; D Branton; D W Deamer
Journal:  Proc Natl Acad Sci U S A       Date:  1996-11-26       Impact factor: 11.205

5.  mRNA cap recognition: dominant role of enhanced stacking interactions between methylated bases and protein aromatic side chains.

Authors:  G Hu; P D Gershon; A E Hodel; F A Quiocho
Journal:  Proc Natl Acad Sci U S A       Date:  1999-06-22       Impact factor: 11.205

6.  Structure of human POT1 bound to telomeric single-stranded DNA provides a model for chromosome end-protection.

Authors:  Ming Lei; Elaine R Podell; Thomas R Cech
Journal:  Nat Struct Mol Biol       Date:  2004-11-21       Impact factor: 15.369

7.  Discrimination of single base substitutions in a DNA strand immobilized in a biological nanopore.

Authors:  Robert F Purnell; Jacob J Schmidt
Journal:  ACS Nano       Date:  2009-09-22       Impact factor: 15.881

Review 8.  The potential and challenges of nanopore sequencing.

Authors:  Daniel Branton; David W Deamer; Andre Marziali; Hagan Bayley; Steven A Benner; Thomas Butler; Massimiliano Di Ventra; Slaven Garaj; Andrew Hibbs; Xiaohua Huang; Stevan B Jovanovich; Predrag S Krstic; Stuart Lindsay; Xinsheng Sean Ling; Carlos H Mastrangelo; Amit Meller; John S Oliver; Yuriy V Pershin; J Michael Ramsey; Robert Riehn; Gautam V Soni; Vincent Tabard-Cossa; Meni Wanunu; Matthew Wiggin; Jeffery A Schloss
Journal:  Nat Biotechnol       Date:  2008-10       Impact factor: 54.908

9.  Evidence for a tyrosine-adenine stacking interaction and for a short-lived open intermediate subsequent to initial binding of Escherichia coli RNA polymerase to promoter DNA.

Authors:  Lisa A Schroeder; Theodore J Gries; Ruth M Saecker; M Thomas Record; Michael E Harris; Pieter L DeHaseth
Journal:  J Mol Biol       Date:  2008-10-17       Impact factor: 5.469

10.  Electronic control of DNA polymerase binding and unbinding to single DNA molecules.

Authors:  Noah A Wilson; Robin Abu-Shumays; Brett Gyarfas; Hongyun Wang; Kate R Lieberman; Mark Akeson; William B Dunbar
Journal:  ACS Nano       Date:  2009-04-28       Impact factor: 15.881
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  38 in total

1.  Identification of epigenetic DNA modifications with a protein nanopore.

Authors:  Emma V B Wallace; David Stoddart; Andrew J Heron; Ellina Mikhailova; Giovanni Maglia; Timothy J Donohoe; Hagan Bayley
Journal:  Chem Commun (Camb)       Date:  2010-10-06       Impact factor: 6.222

2.  DNA base-calling from a nanopore using a Viterbi algorithm.

Authors:  Winston Timp; Jeffrey Comer; Aleksei Aksimentiev
Journal:  Biophys J       Date:  2012-05-15       Impact factor: 4.033

3.  Analysis of single nucleic acid molecules with protein nanopores.

Authors:  Giovanni Maglia; Andrew J Heron; David Stoddart; Deanpen Japrung; Hagan Bayley
Journal:  Methods Enzymol       Date:  2010       Impact factor: 1.600

4.  Subangstrom Measurements of Enzyme Function Using a Biological Nanopore, SPRNT.

Authors:  A H Laszlo; I M Derrrington; J H Gundlach
Journal:  Methods Enzymol       Date:  2016-12-07       Impact factor: 1.600

5.  Temperature and electrolyte optimization of the α-hemolysin latch sensing zone for detection of base modification in double-stranded DNA.

Authors:  Robert P Johnson; Aaron M Fleming; Qian Jin; Cynthia J Burrows; Henry S White
Journal:  Biophys J       Date:  2014-08-19       Impact factor: 4.033

6.  Water Mediates Recognition of DNA Sequence via Ionic Current Blockade in a Biological Nanopore.

Authors:  Swati Bhattacharya; Jejoong Yoo; Aleksei Aksimentiev
Journal:  ACS Nano       Date:  2016-04-15       Impact factor: 15.881

7.  DNA sequence-dependent ionic currents in ultra-small solid-state nanopores.

Authors:  Jeffrey Comer; Aleksei Aksimentiev
Journal:  Nanoscale       Date:  2016-05-05       Impact factor: 7.790

8.  Modulation of the current signatures of DNA abasic site adducts in the α-hemolysin ion channel.

Authors:  Na An; Henry S White; Cynthia J Burrows
Journal:  Chem Commun (Camb)       Date:  2012-10-17       Impact factor: 6.222

9.  Detection of 3'-end RNA uridylation with a protein nanopore.

Authors:  Massimiliano Clamer; Lajos Höfler; Ellina Mikhailova; Gabriella Viero; Hagan Bayley
Journal:  ACS Nano       Date:  2013-12-31       Impact factor: 15.881

10.  Individual RNA base recognition in immobilized oligonucleotides using a protein nanopore.

Authors:  Mariam Ayub; Hagan Bayley
Journal:  Nano Lett       Date:  2012-10-19       Impact factor: 11.189
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