Literature DB >> 23076012

Modulation of the current signatures of DNA abasic site adducts in the α-hemolysin ion channel.

Na An1, Henry S White, Cynthia J Burrows.   

Abstract

Electrical current signatures of DNA adducts were investigated during immobilization of strands inside the membrane-bound α-hemolysin ion channel. The current blockages produced by these adducts were found to depend on both size and shape, providing insights into the DNA-protein interactions and the size limitation of bulky adducts to be translocated.

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Year:  2012        PMID： 23076012      PMCID： PMC3738171          DOI： 10.1039/c2cc36366f

Source DB:  PubMed          Journal:  Chem Commun (Camb)        ISSN： 1359-7345            Impact factor:   6.222


  22 in total

Review 1.  Characterization of nucleic acids by nanopore analysis.

Authors:  David W Deamer; Daniel Branton
Journal:  Acc Chem Res       Date:  2002-10       Impact factor: 22.384

2.  Rapid nanopore discrimination between single polynucleotide molecules.

Authors:  A Meller; L Nivon; E Brandin; J Golovchenko; D Branton
Journal:  Proc Natl Acad Sci U S A       Date:  2000-02-01       Impact factor: 11.205

3.  Enhanced translocation of single DNA molecules through alpha-hemolysin nanopores by manipulation of internal charge.

Authors:  Giovanni Maglia; Marcela Rincon Restrepo; Ellina Mikhailova; Hagan Bayley
Journal:  Proc Natl Acad Sci U S A       Date:  2008-12-05       Impact factor: 11.205

4.  Continuous base identification for single-molecule nanopore DNA sequencing.

Authors:  James Clarke; Hai-Chen Wu; Lakmal Jayasinghe; Alpesh Patel; Stuart Reid; Hagan Bayley
Journal:  Nat Nanotechnol       Date:  2009-02-22       Impact factor: 39.213

5.  Characterization of individual polynucleotide molecules using a membrane channel.

Authors:  J J Kasianowicz; E Brandin; D Branton; D W Deamer
Journal:  Proc Natl Acad Sci U S A       Date:  1996-11-26       Impact factor: 11.205

6.  Nanopore detection of 8-oxo-7,8-dihydro-2'-deoxyguanosine in immobilized single-stranded DNA via adduct formation to the DNA damage site.

Authors:  Anna E P Schibel; Na An; Qian Jin; Aaron M Fleming; Cynthia J Burrows; Henry S White
Journal:  J Am Chem Soc       Date:  2010-12-07       Impact factor: 15.419

7.  Crown ether-electrolyte interactions permit nanopore detection of individual DNA abasic sites in single molecules.

Authors:  Na An; Aaron M Fleming; Henry S White; Cynthia J Burrows
Journal:  Proc Natl Acad Sci U S A       Date:  2012-06-18       Impact factor: 11.205

8.  Molecular bases of cyclodextrin adapter interactions with engineered protein nanopores.

Authors:  Arijit Banerjee; Ellina Mikhailova; Stephen Cheley; Li-Qun Gu; Michelle Montoya; Yasuo Nagaoka; Eric Gouaux; Hagan Bayley
Journal:  Proc Natl Acad Sci U S A       Date:  2010-04-16       Impact factor: 11.205

9.  Multiple base-recognition sites in a biological nanopore: two heads are better than one.

Authors:  David Stoddart; Giovanni Maglia; Ellina Mikhailova; Andrew J Heron; Hagan Bayley
Journal:  Angew Chem Int Ed Engl       Date:  2010       Impact factor: 15.336

Review 10.  The potential and challenges of nanopore sequencing.

Authors:  Daniel Branton; David W Deamer; Andre Marziali; Hagan Bayley; Steven A Benner; Thomas Butler; Massimiliano Di Ventra; Slaven Garaj; Andrew Hibbs; Xiaohua Huang; Stevan B Jovanovich; Predrag S Krstic; Stuart Lindsay; Xinsheng Sean Ling; Carlos H Mastrangelo; Amit Meller; John S Oliver; Yuriy V Pershin; J Michael Ramsey; Robert Riehn; Gautam V Soni; Vincent Tabard-Cossa; Meni Wanunu; Matthew Wiggin; Jeffery A Schloss
Journal:  Nat Biotechnol       Date:  2008-10       Impact factor: 54.908
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  8 in total

1.  Synthesis of Site-Specific Crown Ether Adducts to DNA Abasic Sites: 8-Oxo-7,8-Dihydro-2'-Deoxyguanosine and 2'-Deoxycytidine.

Authors:  Na An; Aaron M Fleming; Nicole C Rosecrans; Yi Liao; Cynthia J Burrows
Journal:  Methods Mol Biol       Date:  2019

2.  Single-molecule detection of a guanine(C8) - thymine(N3) cross-link using ion channel recording.

Authors:  Anna H Wolna; Aaron M Fleming; Cynthia J Burrows
Journal:  J Phys Org Chem       Date:  2014-04-01       Impact factor: 2.391

3.  Detection of benzo[a]pyrene-guanine adducts in single-stranded DNA using the α-hemolysin nanopore.

Authors:  Rukshan T Perera; Aaron M Fleming; Robert P Johnson; Cynthia J Burrows; Henry S White
Journal:  Nanotechnology       Date:  2015-01-28       Impact factor: 3.874

4.  Electrical Current Signatures of DNA Base Modifications in Single Molecules Immobilized in the α-Hemolysin Ion Channel.

Authors:  Anna H Wolna; Aaron M Fleming; Na An; Lidong He; Henry S White; Cynthia J Burrows
Journal:  Isr J Chem       Date:  2013-06-01       Impact factor: 3.333

5.  Characterization of Interstrand DNA-DNA Cross-Links Using the α-Hemolysin Protein Nanopore.

Authors:  Xinyue Zhang; Nathan E Price; Xi Fang; Zhiyu Yang; Li-Qun Gu; Kent S Gates
Journal:  ACS Nano       Date:  2015-11-18       Impact factor: 15.881

Review 6.  The evolution of nanopore sequencing.

Authors:  Yue Wang; Qiuping Yang; Zhimin Wang
Journal:  Front Genet       Date:  2015-01-07       Impact factor: 4.599

7.  Programming nanopore ion flow for encoded multiplex microRNA detection.

Authors:  Xinyue Zhang; Yong Wang; Brandon L Fricke; Li-Qun Gu
Journal:  ACS Nano       Date:  2014-03-26       Impact factor: 15.881

8.  Identification of DNA lesions using a third base pair for amplification and nanopore sequencing.

Authors:  Jan Riedl; Yun Ding; Aaron M Fleming; Cynthia J Burrows
Journal:  Nat Commun       Date:  2015-11-06       Impact factor: 14.919
  8 in total

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