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Literature DB >> 20927439

Identification of epigenetic DNA modifications with a protein nanopore.

Emma V B Wallace¹, David Stoddart, Andrew J Heron, Ellina Mikhailova, Giovanni Maglia, Timothy J Donohoe, Hagan Bayley.

Abstract

Two DNA bases, 5-methylcytosine (5mC) and 5-hydroxymethylcytosine (hmC), marks of epigenetic modification, are recognized in immobilized DNA strands and distinguished from G, A, T and C by nanopore current recording. Therefore, if further aspects of nanopore sequencing can be addressed, the approach will provide a means to locate epigenetic modifications in unamplified genomic DNA.

Entities: Chemical Disease Gene Mutation Species

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Year: 2010 PMID： 20927439 PMCID： PMC3147113 DOI： 10.1039/c0cc02864a

Source DB: PubMed Journal: Chem Commun (Camb) ISSN： 1359-7345 Impact factor: 6.222

34 in total

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Authors: James Clarke; Hai-Chen Wu; Lakmal Jayasinghe; Alpesh Patel; Stuart Reid; Hagan Bayley
Journal: Nat Nanotechnol Date: 2009-02-22 Impact factor: 39.213

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Journal: J Mol Med (Berl) Date: 2006-01-17 Impact factor: 4.599

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Review 9. The potential and challenges of nanopore sequencing.

Authors: Daniel Branton; David W Deamer; Andre Marziali; Hagan Bayley; Steven A Benner; Thomas Butler; Massimiliano Di Ventra; Slaven Garaj; Andrew Hibbs; Xiaohua Huang; Stevan B Jovanovich; Predrag S Krstic; Stuart Lindsay; Xinsheng Sean Ling; Carlos H Mastrangelo; Amit Meller; John S Oliver; Yuriy V Pershin; J Michael Ramsey; Robert Riehn; Gautam V Soni; Vincent Tabard-Cossa; Meni Wanunu; Matthew Wiggin; Jeffery A Schloss
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Review 10. The methylome: approaches for global DNA methylation profiling.

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Journal: Trends Genet Date: 2008-03-05 Impact factor: 11.639

66 in total

1. Detection and mapping of 5-methylcytosine and 5-hydroxymethylcytosine with nanopore MspA.

Authors: Andrew H Laszlo; Ian M Derrington; Henry Brinkerhoff; Kyle W Langford; Ian C Nova; Jenny Mae Samson; Joshua J Bartlett; Mikhail Pavlenok; Jens H Gundlach
Journal: Proc Natl Acad Sci U S A Date: 2013-10-28 Impact factor: 11.205

Review 2. Emerging roles of TET proteins and 5-hydroxymethylcytosines in active DNA demethylation and beyond.

Authors: Junjie U Guo; Yijing Su; Chun Zhong; Guo-li Ming; Hongjun Song
Journal: Cell Cycle Date: 2011-08-15 Impact factor: 4.534

Review 3. Challenges in DNA motion control and sequence readout using nanopore devices.

Authors: Spencer Carson; Meni Wanunu
Journal: Nanotechnology Date: 2015-02-02 Impact factor: 3.874

4. Long dwell-time passage of DNA through nanometer-scale pores: kinetics and sequence dependence of motion.

Authors: Nahid N Jetha; Christopher Feehan; Matthew Wiggin; Vincent Tabard-Cossa; Andre Marziali
Journal: Biophys J Date: 2011-06-22 Impact factor: 4.033

5. Polycationic Probe-Guided Nanopore Single-Molecule Counter for Selective miRNA Detection.

Authors: Kai Tian; Ruicheng Shi; Amy Gu; Michael Pennella; Li-Qun Gu
Journal: Methods Mol Biol Date: 2017

6. Smooth DNA transport through a narrowed pore geometry.

Authors: Spencer Carson; James Wilson; Aleksei Aksimentiev; Meni Wanunu
Journal: Biophys J Date: 2014-11-18 Impact factor: 4.033

7. Toward single-molecule optical mapping of the epigenome.

Authors: Michal Levy-Sakin; Assaf Grunwald; Soohong Kim; Natalie R Gassman; Anna Gottfried; Josh Antelman; Younggyu Kim; Sam O Ho; Robin Samuel; Xavier Michalet; Ron R Lin; Thomas Dertinger; Andrew S Kim; Sangyoon Chung; Ryan A Colyer; Elmar Weinhold; Shimon Weiss; Yuval Ebenstein
Journal: ACS Nano Date: 2013-12-20 Impact factor: 15.881