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Literature DB >> 20012442

Analysis of 21 X-chromosomal STRs in an Algerian population sample.

Asmahan Bekada¹, Soraya Benhamamouch, Abdallah Boudjema, Mustapha Fodil, Silvia Menegon, Carlo Torre, Carlo Robino.

Abstract

Twenty-one X-chromosomal short tandem repeat loci, including the six clusters of linked markers DXS10148-DXS10135-DXS8378 (Xp22), DXS7132-DXS10074-DXS10079 (Xq12), DXS6801-DXS6809-DXS6789 (Xq21), DXS7424-DXS101 (Xq22), DXS10103-HPRTB-DXS10101 (Xq26), DXS8377-DXS10146-DXS10134-DXS7423-DXS10011 (Xq28), and the loci DXS6800 and GATA172D05 were typed in a northwestern Algerian population sample (n = 210; 104 men and 106 women). Allele and haplotype frequencies were calculated. No evidence of linkage disequilibrium was observed between pairs of loci within clusters of linked markers. At locus DXS10148, sequence analysis of a subset of alleles displaying unusual amplicon length (>/= 36 repeat units) and anomalous electrophoretic mobility showed that this marker has a complex molecular structure with different repeat variants within alleles of identical amplicon size.

Entities: Species

Mesh：

Substances：
Genetic Markers

Year: 2009 PMID： 20012442 DOI： 10.1007/s00414-009-0397-9

Source DB: PubMed Journal: Int J Legal Med ISSN： 0937-9827 Impact factor: 2.686

31 in total

Review 1. The X chromosome in population genetics.

Authors: Stephen F Schaffner
Journal: Nat Rev Genet Date: 2004-01 Impact factor: 53.242

2. Population genetic evaluation of eight X-chromosomal short tandem repeat loci using Mentype Argus X-8 PCR amplification kit.

Authors: Dorit Becker; Heike Rodig; Christa Augustin; Jeanett Edelmann; Frank Götz; Sandra Hering; Reinhard Szibor; Werner Brabetz
Journal: Forensic Sci Int Genet Date: 2007-09-29 Impact factor: 4.882

Review 3. X-chromosomal markers: past, present and future.

Authors: Reinhard Szibor
Journal: Forensic Sci Int Genet Date: 2007-04-27 Impact factor: 4.882

4. Analysis of linkage and linkage disequilibrium for eight X-STR markers.

Authors: Andreas O Tillmar; Petter Mostad; Thore Egeland; Bertil Lindblom; Gunilla Holmlund; Kerstin Montelius
Journal: Forensic Sci Int Genet Date: 2008-10-26 Impact factor: 4.882

5. Japanese population data on X-chromosomal STR locus AR.

Authors: T Kishida; Y Tamaki
Journal: Nihon Hoigaku Zasshi Date: 1997-10

6. A simple salting out procedure for extracting DNA from human nucleated cells.

Authors: S A Miller; D D Dykes; H F Polesky
Journal: Nucleic Acids Res Date: 1988-02-11 Impact factor: 16.971

7. X chromosome evidence for ancient human histories.

Authors: E E Harris; J Hey
Journal: Proc Natl Acad Sci U S A Date: 1999-03-16 Impact factor: 11.205

Review 8. Construction of a genetic linkage map in man using restriction fragment length polymorphisms.

Authors: D Botstein; R L White; M Skolnick; R W Davis
Journal: Am J Hum Genet Date: 1980-05 Impact factor: 11.025

9. A worldwide phylogeography for the human X chromosome.

Authors: Simone S Santos-Lopes; Rinaldo W Pereira; Ian J Wilson; Sérgio D J Pena
Journal: PLoS One Date: 2007-06-27 Impact factor: 3.240

10. X-chromosome SNP analyses in 11 human Mediterranean populations show a high overall genetic homogeneity except in North-west Africans (Moroccans).

Authors: Carmen Tomas; Juan J Sanchez; Anna Barbaro; Conxita Brandt-Casadevall; Alexis Hernandez; Mohamed Ben Dhiab; Misericordia Ramon; Niels Morling
Journal: BMC Evol Biol Date: 2008-02-29 Impact factor: 3.260

11 in total

Analysis of 21 X-chromosomal STRs in an Algerian population sample.

Review 1. The X chromosome in population genetics.

2. Population genetic evaluation of eight X-chromosomal short tandem repeat loci using Mentype Argus X-8 PCR amplification kit.

Review 3. X-chromosomal markers: past, present and future.

4. Analysis of linkage and linkage disequilibrium for eight X-STR markers.

5. Japanese population data on X-chromosomal STR locus AR.

6. A simple salting out procedure for extracting DNA from human nucleated cells.

7. X chromosome evidence for ancient human histories.

Review 8. Construction of a genetic linkage map in man using restriction fragment length polymorphisms.

9. A worldwide phylogeography for the human X chromosome.

10. X-chromosome SNP analyses in 11 human Mediterranean populations show a high overall genetic homogeneity except in North-west Africans (Moroccans).

1. Genetic polymorphisms of 12 X-STR for forensic purposes in Shanghai Han population from China.

2. Development and population study of the 12 X-STR loci multiplexes PCR systems.

3. Development of the nine X-STR loci typing system and genetic analysis in three nationality populations from China.

4. Genetic analysis of the 10 ChrX STRs loci in Chinese Han nationality from Guangdong province.

5. Genetic study of 12 X-STRs in Malay population living in and around Kuala Lumpur using Investigator Argus X-12 kit.

6. Development of 11 X-STR loci typing system and genetic analysis in Tibetan and Northern Han populations from China.

7. Analysis of 12 X-STRs in Greenlanders, Danes and Somalis using Argus X-12.

8. Analysis of 12 X-STR loci in the population of south Croatia.

9. Allele and haplotype diversity of X-chromosomal STRs in Ivory Coast.

10. Allele and Haplotype Diversity of 26 X-STR Loci in Four Nationality Populations from China.