Literature DB >> 19910228

A bioreactor for in-cell protein NMR.

Naima G Sharaf1, Christopher O Barnes, Lisa M Charlton, Gregory B Young, Gary J Pielak.   

Abstract

The inside of the cell is a complex environment that is difficult to simulate when studying proteins and other molecules in vitro. We have developed a device and system that provides a controlled environment for nuclear magnetic resonance (NMR) experiments involving living cells. Our device comprises two main parts, an NMR detection region and a circulation system. The flow of medium from the bottom of the device pushes alginate encapsulated cells into the circulation chamber. In the chamber, the exchange of oxygen and nutrients occurs between the media and the encapsulated cells. When the media flow is stopped, the encapsulated cells fall back into the NMR detection region, and spectra can be acquired. We have utilized the bioreactor to study the expression of the natively disordered protein alpha-synuclein, inside Escherichia coli cells. Copyright 2009 Elsevier Inc. All rights reserved.

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Year:  2009        PMID: 19910228      PMCID: PMC2818327          DOI: 10.1016/j.jmr.2009.10.008

Source DB:  PubMed          Journal:  J Magn Reson        ISSN: 1090-7807            Impact factor:   2.229


  21 in total

1.  Very fast two-dimensional NMR spectroscopy for real-time investigation of dynamic events in proteins on the time scale of seconds.

Authors:  Paul Schanda; Bernhard Brutscher
Journal:  J Am Chem Soc       Date:  2005-06-08       Impact factor: 15.419

2.  NMRPipe: a multidimensional spectral processing system based on UNIX pipes.

Authors:  F Delaglio; S Grzesiek; G W Vuister; G Zhu; J Pfeifer; A Bax
Journal:  J Biomol NMR       Date:  1995-11       Impact factor: 2.835

3.  The pUC plasmids, an M13mp7-derived system for insertion mutagenesis and sequencing with synthetic universal primers.

Authors:  J Vieira; J Messing
Journal:  Gene       Date:  1982-10       Impact factor: 3.688

4.  Measurement of intracellular (compartmental) pH by 31P NMR in Aspergillus niger.

Authors:  S J Hesse; G J Ruijter; C Dijkema; J Visser
Journal:  J Biotechnol       Date:  2000-01-28       Impact factor: 3.307

5.  Temperature-induced reversible conformational change in the first 100 residues of alpha-synuclein.

Authors:  Brian C McNulty; Ashutosh Tripathy; Gregory B Young; Lisa M Charlton; Jillian Orans; Gary J Pielak
Journal:  Protein Sci       Date:  2006-02-01       Impact factor: 6.725

6.  Development and application of a membrane cyclone reactor for in vivo NMR spectroscopy with high microbial cell densities.

Authors:  A Hartbrich; G Schmitz; D Weuster-Botz; A A de Graaf; C Wandrey
Journal:  Biotechnol Bioeng       Date:  1996-09-20       Impact factor: 4.530

7.  A system for viably maintaining a stirred suspension of multicellular spheroids during NMR spectroscopy.

Authors:  J P Freyer; N H Fink; P L Schor; J R Coulter; M Neeman; L O Sillerud
Journal:  NMR Biomed       Date:  1990-10       Impact factor: 4.044

8.  15N NMR spin relaxation dispersion study of the molecular crowding effects on protein folding under native conditions.

Authors:  Xuanjun Ai; Zheng Zhou; Yawen Bai; Wing-Yiu Choy
Journal:  J Am Chem Soc       Date:  2006-03-29       Impact factor: 15.419

9.  Protein nuclear magnetic resonance under physiological conditions.

Authors:  Gary J Pielak; Conggang Li; Andrew C Miklos; Alexander P Schlesinger; Kristin M Slade; Gui-Fang Wang; Imola G Zigoneanu
Journal:  Biochemistry       Date:  2009-01-20       Impact factor: 3.162

10.  NMR bioreactor development for live in-situ microbial functional analysis.

Authors:  Paul D Majors; Jeffrey S McLean; Johannes C M Scholten
Journal:  J Magn Reson       Date:  2008-02-16       Impact factor: 2.229

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  20 in total

1.  Interaction of α-synuclein and a cell penetrating fusion peptide with higher eukaryotic cell membranes assessed by ¹⁹F NMR.

Authors:  Imola G Zigoneanu; Gary J Pielak
Journal:  Mol Pharm       Date:  2012-03-13       Impact factor: 4.939

Review 2.  A Unique Tool for Cellular Structural Biology: In-cell NMR.

Authors:  Enrico Luchinat; Lucia Banci
Journal:  J Biol Chem       Date:  2015-12-16       Impact factor: 5.157

3.  A new carbamidemethyl-linked lanthanoid chelating tag for PCS NMR spectroscopy of proteins in living HeLa cells.

Authors:  Yuya Hikone; Go Hirai; Masaki Mishima; Kohsuke Inomata; Teppei Ikeya; Souichiro Arai; Masahiro Shirakawa; Mikiko Sodeoka; Yutaka Ito
Journal:  J Biomol NMR       Date:  2016-09-08       Impact factor: 2.835

4.  Improved sensitivity and resolution of in-cell NMR spectra.

Authors:  David S Burz; Leonard Breindel; Alexander Shekhtman
Journal:  Methods Enzymol       Date:  2019-03-13       Impact factor: 1.600

5.  Macromolecular crowding fails to fold a globular protein in cells.

Authors:  Alexander P Schlesinger; Yaqiang Wang; Xavier Tadeo; Oscar Millet; Gary J Pielak
Journal:  J Am Chem Soc       Date:  2011-05-10       Impact factor: 15.419

6.  Real-Time In-Cell Nuclear Magnetic Resonance: Ribosome-Targeted Antibiotics Modulate Quinary Protein Interactions.

Authors:  Leonard Breindel; Christopher DeMott; David S Burz; Alexander Shekhtman
Journal:  Biochemistry       Date:  2018-01-08       Impact factor: 3.162

Review 7.  In-Cell NMR Spectroscopy of Intrinsically Disordered Proteins.

Authors:  Nicholas Sciolino; David S Burz; Alexander Shekhtman
Journal:  Proteomics       Date:  2019-01-15       Impact factor: 3.984

8.  Diffusion in crowded biological environments: applications of Brownian dynamics.

Authors:  Maciej Długosz; Joanna Trylska
Journal:  BMC Biophys       Date:  2011-03-02       Impact factor: 4.778

9.  In-Cell NMR of Intrinsically Disordered Proteins in Mammalian Cells.

Authors:  Juan A Gerez; Natalia C Prymaczok; Roland Riek
Journal:  Methods Mol Biol       Date:  2020

10.  Towards Profiling of the G-Quadruplex Targeting Drugs in the Living Human Cells Using NMR Spectroscopy.

Authors:  Daniel Krafčík; Eva Ištvánková; Šimon Džatko; Pavlína Víšková; Silvie Foldynová-Trantírková; Lukáš Trantírek
Journal:  Int J Mol Sci       Date:  2021-06-03       Impact factor: 5.923

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