Literature DB >> 19860716

Structural genomics and drug discovery for infectious diseases.

W F Anderson1.   

Abstract

The application of structural genomics methods and approaches to proteins from organisms causing infectious diseases is making available the three dimensional structures of many proteins that are potential drug targets and laying the groundwork for structure aided drug discovery efforts. There are a number of structural genomics projects with a focus on pathogens that have been initiated worldwide. The Center for Structural Genomics of Infectious Diseases (CSGID) was recently established to apply state-of-the-art high throughput structural biology technologies to the characterization of proteins from the National Institute for Allergy and Infectious Diseases (NIAID) category A-C pathogens and organisms causing emerging, or re-emerging infectious diseases. The target selection process emphasizes potential biomedical benefits. Selected proteins include known drug targets and their homologs, essential enzymes, virulence factors and vaccine candidates. The Center also provides a structure determination service for the infectious disease scientific community. The ultimate goal is to generate a library of structures that are available to the scientific community and can serve as a starting point for further research and structure aided drug discovery for infectious diseases. To achieve this goal, the CSGID will determine protein crystal structures of 400 proteins and protein-ligand complexes using proven, rapid, highly integrated, and cost-effective methods for such determination, primarily by X-ray crystallography. High throughput crystallographic structure determination is greatly aided by frequent, convenient access to high-performance beamlines at third-generation synchrotron X-ray sources.

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Year:  2009        PMID: 19860716      PMCID: PMC2789569          DOI: 10.2174/187152609789105713

Source DB:  PubMed          Journal:  Infect Disord Drug Targets        ISSN: 1871-5265


  29 in total

1.  Discovering novel ligands for macromolecules using X-ray crystallographic screening.

Authors:  V L Nienaber; P L Richardson; V Klighofer; J J Bouska; V L Giranda; J Greer
Journal:  Nat Biotechnol       Date:  2000-10       Impact factor: 54.908

2.  Announcing the worldwide Protein Data Bank.

Authors:  Helen Berman; Kim Henrick; Haruki Nakamura
Journal:  Nat Struct Biol       Date:  2003-12

Review 3.  Entropy and surface engineering in protein crystallization.

Authors:  Zygmunt S Derewenda; Peter G Vekilov
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2005-12-14

Review 4.  Fragment-based lead discovery: leads by design.

Authors:  Robin A E Carr; Miles Congreve; Christopher W Murray; David C Rees
Journal:  Drug Discov Today       Date:  2005-07-15       Impact factor: 7.851

Review 5.  Structural biology and drug discovery.

Authors:  Miles Congreve; Christopher W Murray; Tom L Blundell
Journal:  Drug Discov Today       Date:  2005-07-01       Impact factor: 7.851

Review 6.  Antibacterial drug discovery and structure-based design.

Authors:  John J Barker
Journal:  Drug Discov Today       Date:  2006-05       Impact factor: 7.851

7.  HKL-3000: the integration of data reduction and structure solution--from diffraction images to an initial model in minutes.

Authors:  Wladek Minor; Marcin Cymborowski; Zbyszek Otwinowski; Maksymilian Chruszcz
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2006-07-18

Review 8.  Essential genes on metabolic maps.

Authors:  Svetlana Gerdes; Robert Edwards; Michael Kubal; Michael Fonstein; Rick Stevens; Andrei Osterman
Journal:  Curr Opin Biotechnol       Date:  2006-09-15       Impact factor: 9.740

Review 9.  Host-bacterial mutualism in the human intestine.

Authors:  Fredrik Bäckhed; Ruth E Ley; Justin L Sonnenburg; Daniel A Peterson; Jeffrey I Gordon
Journal:  Science       Date:  2005-03-25       Impact factor: 47.728

Review 10.  Structural genomics of pathogenic protozoa: an overview.

Authors:  Erkang Fan; David Baker; Stanley Fields; Michael H Gelb; Frederick S Buckner; Wesley C Van Voorhis; Eric Phizicky; Mark Dumont; Christopher Mehlin; Elizabeth Grayhack; Mark Sullivan; Christophe Verlinde; George Detitta; Deirdre R Meldrum; Ethan A Merritt; Thomas Earnest; Michael Soltis; Frank Zucker; Peter J Myler; Lori Schoenfeld; David Kim; Liz Worthey; Doug Lacount; Marissa Vignali; Jizhen Li; Somnath Mondal; Archna Massey; Brian Carroll; Stacey Gulde; Joseph Luft; Larry Desoto; Mark Holl; Jonathan Caruthers; Jürgen Bosch; Mark Robien; Tracy Arakaki; Margaret Holmes; Isolde Le Trong; Wim G J Hol
Journal:  Methods Mol Biol       Date:  2008
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  24 in total

1.  Crystal structures of putative phosphoglycerate kinases from B. anthracis and C. jejuni.

Authors:  Heping Zheng; Ekaterina V Filippova; Karolina L Tkaczuk; Piotr Dworzynski; Maksymilian Chruszcz; Przemyslaw J Porebski; Zdzislaw Wawrzak; Olena Onopriyenko; Marina Kudritska; Sarah Grimshaw; Alexei Savchenko; Wayne F Anderson; Wladek Minor
Journal:  J Struct Funct Genomics       Date:  2012-03-10

2.  Structure of a short-chain dehydrogenase/reductase from Bacillus anthracis.

Authors:  Jing Hou; Kamila Wojciechowska; Heping Zheng; Maksymilian Chruszcz; David R Cooper; Marcin Cymborowski; Tatiana Skarina; Elena Gordon; Haibin Luo; Alexei Savchenko; Wladek Minor
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2012-05-24

Review 3.  X-ray crystallography over the past decade for novel drug discovery - where are we heading next?

Authors:  Heping Zheng; Katarzyna B Handing; Matthew D Zimmerman; Ivan G Shabalin; Steven C Almo; Wladek Minor
Journal:  Expert Opin Drug Discov       Date:  2015-07-15       Impact factor: 6.098

4.  First experiences with semi-autonomous robotic harvesting of protein crystals.

Authors:  Robert Viola; Jace Walsh; Alex Melka; Wesley Womack; Sean Murphy; Alan Riboldi-Tunnicliffe; Bernhard Rupp
Journal:  J Struct Funct Genomics       Date:  2011-03-23

5.  PSI:Biology-materials repository: a biologist's resource for protein expression plasmids.

Authors:  Catherine Y Cormier; Jin G Park; Michael Fiacco; Jason Steel; Preston Hunter; Jason Kramer; Rajeev Singla; Joshua LaBaer
Journal:  J Struct Funct Genomics       Date:  2011-03-01

6.  Crystal Structures of the SpoIID Lytic Transglycosylases Essential for Bacterial Sporulation.

Authors:  Salvatore Nocadello; George Minasov; Ludmilla S Shuvalova; Ievgeniia Dubrovska; Elisabetta Sabini; Wayne F Anderson
Journal:  J Biol Chem       Date:  2016-05-18       Impact factor: 5.157

Review 7.  Unmet challenges of structural genomics.

Authors:  Maksymilian Chruszcz; Marcin Domagalski; Tomasz Osinski; Alexander Wlodawer; Wladek Minor
Journal:  Curr Opin Struct Biol       Date:  2010-08-31       Impact factor: 6.809

8.  A conserved surface loop in type I dehydroquinate dehydratases positions an active site arginine and functions in substrate binding.

Authors:  Samuel H Light; George Minasov; Ludmilla Shuvalova; Scott N Peterson; Michael Caffrey; Wayne F Anderson; Arnon Lavie
Journal:  Biochemistry       Date:  2011-02-21       Impact factor: 3.162

9.  To automate or not to automate: this is the question.

Authors:  M Cymborowski; M Klimecka; M Chruszcz; M D Zimmerman; I A Shumilin; D Borek; K Lazarski; A Joachimiak; Z Otwinowski; W Anderson; W Minor
Journal:  J Struct Funct Genomics       Date:  2010-06-06

10.  Biophysical analysis of the putative acetyltransferase SACOL2570 from methicillin-resistant Staphylococcus aureus.

Authors:  Hai-Bin Luo; Aleksandra A Knapik; Janusz J Petkowski; Matthew Demas; Igor A Shumilin; Heping Zheng; Maksymilian Chruszcz; Wladek Minor
Journal:  J Struct Funct Genomics       Date:  2013-08-21
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