Literature DB >> 16855301

HKL-3000: the integration of data reduction and structure solution--from diffraction images to an initial model in minutes.

Wladek Minor1, Marcin Cymborowski, Zbyszek Otwinowski, Maksymilian Chruszcz.   

Abstract

A new approach that integrates data collection, data reduction, phasing and model building significantly accelerates the process of structure determination and on average minimizes the number of data sets and synchrotron time required for structure solution. Initial testing of the HKL-3000 system (the beta version was named HKL-2000_ph) with more than 140 novel structure determinations has proven its high value for MAD/SAD experiments. The heuristics for choosing the best computational strategy at different data resolution limits of phasing signal and crystal diffraction are being optimized. The typical end result is an interpretable electron-density map with a partially built structure and, in some cases, an almost complete refined model. The current development is oriented towards very fast structure solution in order to provide feedback during the diffraction experiment. Work is also proceeding towards improving the quality of phasing calculation and model building.

Mesh:

Year:  2006        PMID: 16855301     DOI: 10.1107/S0907444906019949

Source DB:  PubMed          Journal:  Acta Crystallogr D Biol Crystallogr        ISSN: 0907-4449


  1086 in total

1.  Alternaria alternata allergen Alt a 1: a unique β-barrel protein dimer found exclusively in fungi.

Authors:  Maksymilian Chruszcz; Martin D Chapman; Tomasz Osinski; Robert Solberg; Matthew Demas; Przemyslaw J Porebski; Karolina A Majorek; Anna Pomés; Wladek Minor
Journal:  J Allergy Clin Immunol       Date:  2012-06-02       Impact factor: 10.793

2.  Crystal structures of putative phosphoglycerate kinases from B. anthracis and C. jejuni.

Authors:  Heping Zheng; Ekaterina V Filippova; Karolina L Tkaczuk; Piotr Dworzynski; Maksymilian Chruszcz; Przemyslaw J Porebski; Zdzislaw Wawrzak; Olena Onopriyenko; Marina Kudritska; Sarah Grimshaw; Alexei Savchenko; Wayne F Anderson; Wladek Minor
Journal:  J Struct Funct Genomics       Date:  2012-03-10

3.  Zooming in on Cadherin-23: Structural Diversity and Potential Mechanisms of Inherited Deafness.

Authors:  Avinash Jaiganesh; Pedro De-la-Torre; Aniket A Patel; Domenic J Termine; Florencia Velez-Cortes; Conghui Chen; Marcos Sotomayor
Journal:  Structure       Date:  2018-07-19       Impact factor: 5.006

4.  Structural Insights into 6-Hydroxypseudooxynicotine Amine Oxidase from Pseudomonas geniculata N1, the Key Enzyme Involved in Nicotine Degradation.

Authors:  Gongquan Liu; Weiwei Wang; Fangyuan He; Peng Zhang; Ping Xu; Hongzhi Tang
Journal:  Appl Environ Microbiol       Date:  2020-09-17       Impact factor: 4.792

5.  Crystal structure of checkpoint kinase 2 in complex with NSC 109555, a potent and selective inhibitor.

Authors:  George T Lountos; Joseph E Tropea; Di Zhang; Andrew G Jobson; Yves Pommier; Robert H Shoemaker; David S Waugh
Journal:  Protein Sci       Date:  2009-01       Impact factor: 6.725

6.  Mechanism of IRSp53 inhibition and combinatorial activation by Cdc42 and downstream effectors.

Authors:  David J Kast; Changsong Yang; Andrea Disanza; Malgorzata Boczkowska; Yadaiah Madasu; Giorgio Scita; Tatyana Svitkina; Roberto Dominguez
Journal:  Nat Struct Mol Biol       Date:  2014-03-02       Impact factor: 15.369

7.  Multifunctionality and mechanism of ligand binding in a mosquito antiinflammatory protein.

Authors:  Eric Calvo; Ben J Mans; José M C Ribeiro; John F Andersen
Journal:  Proc Natl Acad Sci U S A       Date:  2009-02-20       Impact factor: 11.205

8.  Structural dissection reveals a general mechanistic principle for group II chitinase (ChtII) inhibition.

Authors:  Wei Chen; Yong Zhou; Qing Yang
Journal:  J Biol Chem       Date:  2019-05-03       Impact factor: 5.157

9.  Functional Profiling and Crystal Structures of Isothiocyanate Hydrolases Found in Gut-Associated and Plant-Pathogenic Bacteria.

Authors:  Tijs J M van den Bosch; Kemin Tan; Andrzej Joachimiak; Cornelia U Welte
Journal:  Appl Environ Microbiol       Date:  2018-07-02       Impact factor: 4.792

10.  Structure of a myosin•adaptor complex and pairing by cargo.

Authors:  Hang Shi; Nimisha Singh; Filipp Esselborn; Günter Blobel
Journal:  Proc Natl Acad Sci U S A       Date:  2014-02-12       Impact factor: 11.205

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.