Literature DB >> 18542886

Structural genomics of pathogenic protozoa: an overview.

Erkang Fan1, David Baker, Stanley Fields, Michael H Gelb, Frederick S Buckner, Wesley C Van Voorhis, Eric Phizicky, Mark Dumont, Christopher Mehlin, Elizabeth Grayhack, Mark Sullivan, Christophe Verlinde, George Detitta, Deirdre R Meldrum, Ethan A Merritt, Thomas Earnest, Michael Soltis, Frank Zucker, Peter J Myler, Lori Schoenfeld, David Kim, Liz Worthey, Doug Lacount, Marissa Vignali, Jizhen Li, Somnath Mondal, Archna Massey, Brian Carroll, Stacey Gulde, Joseph Luft, Larry Desoto, Mark Holl, Jonathan Caruthers, Jürgen Bosch, Mark Robien, Tracy Arakaki, Margaret Holmes, Isolde Le Trong, Wim G J Hol.   

Abstract

The Structural Genomics of Pathogenic Protozoa (SGPP) Consortium aimed to determine crystal structures of proteins from trypanosomatid and malaria parasites in a high throughput manner. The pipeline of target selection, protein production, crystallization, and structure determination, is sketched. Special emphasis is given to a number of technology developments including domain prediction, the use of "co-crystallants," and capillary crystallization. "Fragment cocktail crystallography" for medical structural genomics is also described.

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Year:  2008        PMID: 18542886     DOI: 10.1007/978-1-60327-058-8_33

Source DB:  PubMed          Journal:  Methods Mol Biol        ISSN: 1064-3745


  25 in total

Review 1.  Global phenotypic screening for antimalarials.

Authors:  W Armand Guiguemde; Anang A Shelat; Jose F Garcia-Bustos; Thierry T Diagana; Francisco-Javier Gamo; R Kiplin Guy
Journal:  Chem Biol       Date:  2012-01-27

2.  Screening a fragment cocktail library using ultrafiltration.

Authors:  Sayaka Shibata; Zhongsheng Zhang; Konstantin V Korotkov; Jaclyn Delarosa; Alberto Napuli; Angela M Kelley; Natasha Mueller; Jennifer Ross; Frank H Zucker; Frederick S Buckner; Ethan A Merritt; Christophe L M J Verlinde; Wesley C Van Voorhis; Wim G J Hol; Erkang Fan
Journal:  Anal Bioanal Chem       Date:  2011-07-13       Impact factor: 4.142

3.  Prediction of protein crystallization outcome using a hybrid method.

Authors:  Frank H Zucker; Christine Stewart; Jaclyn dela Rosa; Jessica Kim; Li Zhang; Liren Xiao; Jenni Ross; Alberto J Napuli; Natascha Mueller; Lisa J Castaneda; Stephen R Nakazawa Hewitt; Tracy L Arakaki; Eric T Larson; Easwara Subramanian; Christophe L M J Verlinde; Erkang Fan; Frederick S Buckner; Wesley C Van Voorhis; Ethan A Merritt; Wim G J Hol
Journal:  J Struct Biol       Date:  2010-03-27       Impact factor: 2.867

4.  The structure of tryptophanyl-tRNA synthetase from Giardia lamblia reveals divergence from eukaryotic homologs.

Authors:  Tracy L Arakaki; Megan Carter; Alberto J Napuli; Christophe L M J Verlinde; Erkang Fan; Frank Zucker; Frederick S Buckner; Wesley C Van Voorhis; Wim G J Hol; Ethan A Merritt
Journal:  J Struct Biol       Date:  2010-05-08       Impact factor: 2.867

Review 5.  Unmet challenges of structural genomics.

Authors:  Maksymilian Chruszcz; Marcin Domagalski; Tomasz Osinski; Alexander Wlodawer; Wladek Minor
Journal:  Curr Opin Struct Biol       Date:  2010-08-31       Impact factor: 6.809

6.  Distinct states of methionyl-tRNA synthetase indicate inhibitor binding by conformational selection.

Authors:  Cho Yeow Koh; Jessica E Kim; Sayaka Shibata; Ranae M Ranade; Mingyan Yu; Jiyun Liu; J Robert Gillespie; Frederick S Buckner; Christophe L M J Verlinde; Erkang Fan; Wim G J Hol
Journal:  Structure       Date:  2012-08-16       Impact factor: 5.006

7.  Distinct genomic architecture of Plasmodium falciparum populations from South Asia.

Authors:  Shiva Kumar; Devaraja G Mudeppa; Ambika Sharma; Anjali Mascarenhas; Rashmi Dash; Ligia Pereira; Riaz Basha Shaik; Jennifer N Maki; John White; Wenyun Zuo; Shripad Tuljapurkar; Manoj T Duraisingh; Edwin Gomes; Laura Chery; Pradipsinh K Rathod
Journal:  Mol Biochem Parasitol       Date:  2016-07-22       Impact factor: 1.759

Review 8.  Fragment-based cocktail crystallography by the medical structural genomics of pathogenic protozoa consortium.

Authors:  Christophe L M J Verlinde; Erkang Fan; Sayaka Shibata; Zongsheng Zhang; Zhihua Sun; Wei Deng; Jennifer Ross; Jessica Kim; Liren Xiao; Tracy L Arakaki; Jürgen Bosch; Jonathan M Caruthers; Eric T Larson; Isolde Letrong; Alberto Napuli; Angela Kelly; Natasha Mueller; Frank Zucker; Wesley C Van Voorhis; Frederick S Buckner; Ethan A Merritt; Wim G J Hol
Journal:  Curr Top Med Chem       Date:  2009       Impact factor: 3.295

9.  Heterologous expression of L. major proteins in S. cerevisiae: a test of solubility, purity, and gene recoding.

Authors:  Erin Quartley; Andrei Alexandrov; Maryann Mikucki; Frederick S Buckner; Wim G Hol; George T DeTitta; Eric M Phizicky; Elizabeth J Grayhack
Journal:  J Struct Funct Genomics       Date:  2009-08-22

Review 10.  The role of medical structural genomics in discovering new drugs for infectious diseases.

Authors:  Wesley C Van Voorhis; Wim G J Hol; Peter J Myler; Lance J Stewart
Journal:  PLoS Comput Biol       Date:  2009-10-26       Impact factor: 4.475

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