Literature DB >> 19854129

"Cotranscriptionality": the transcription elongation complex as a nexus for nuclear transactions.

Roberto Perales1, David Bentley.   

Abstract

Much of the complex process of RNP biogenesis takes place at the gene cotranscriptionally. The target for RNA binding and processing factors is, therefore, not a solitary RNA molecule but, rather, a transcription elongation complex (TEC) comprising the growing nascent RNA and RNA polymerase traversing a chromatin template with associated passenger proteins. RNA maturation factors are not the only nuclear machines whose work is organized cotranscriptionally around the TEC scaffold. Additionally, DNA repair, covalent chromatin modification, "gene gating" at the nuclear pore, Ig gene hypermutation, and sister chromosome cohesion have all been demonstrated or suggested to involve a cotranscriptional component. From this perspective, TECs can be viewed as potent "community organizers" within the nucleus.

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Year:  2009        PMID: 19854129      PMCID: PMC2770090          DOI: 10.1016/j.molcel.2009.09.018

Source DB:  PubMed          Journal:  Mol Cell        ISSN: 1097-2765            Impact factor:   17.970


  128 in total

1.  RNA Pol II subunit Rpb7 promotes centromeric transcription and RNAi-directed chromatin silencing.

Authors:  Ingela Djupedal; Manuela Portoso; Henrik Spåhr; Carolina Bonilla; Claes M Gustafsson; Robin C Allshire; Karl Ekwall
Journal:  Genes Dev       Date:  2005-10-01       Impact factor: 11.361

2.  RNA polymerase II is required for RNAi-dependent heterochromatin assembly.

Authors:  Hiroaki Kato; Derek B Goto; Robert A Martienssen; Takeshi Urano; Koichi Furukawa; Yota Murakami
Journal:  Science       Date:  2005-06-09       Impact factor: 47.728

3.  The human SWI/SNF subunit Brm is a regulator of alternative splicing.

Authors:  Eric Batsché; Moshe Yaniv; Christian Muchardt
Journal:  Nat Struct Mol Biol       Date:  2005-12-11       Impact factor: 15.369

4.  Cotranscriptional spliceosome assembly occurs in a stepwise fashion and requires the cap binding complex.

Authors:  Janina Görnemann; Kimberly M Kotovic; Katja Hujer; Karla M Neugebauer
Journal:  Mol Cell       Date:  2005-07-01       Impact factor: 17.970

Review 5.  Terminating the transcript: breaking up is hard to do.

Authors:  Emanuel Rosonina; Syuzo Kaneko; James L Manley
Journal:  Genes Dev       Date:  2006-05-01       Impact factor: 11.361

6.  Nrd1 interacts with the nuclear exosome for 3' processing of RNA polymerase II transcripts.

Authors:  Lidia Vasiljeva; Stephen Buratowski
Journal:  Mol Cell       Date:  2006-01-20       Impact factor: 17.970

Review 7.  RNA folding during transcription.

Authors:  Tao Pan; Tobin Sosnick
Journal:  Annu Rev Biophys Biomol Struct       Date:  2006

8.  Cotranscriptional spliceosome assembly dynamics and the role of U1 snRNA:5'ss base pairing in yeast.

Authors:  Scott A Lacadie; Michael Rosbash
Journal:  Mol Cell       Date:  2005-07-01       Impact factor: 17.970

9.  The growing pre-mRNA recruits actin and chromatin-modifying factors to transcriptionally active genes.

Authors:  Mikael Sjölinder; Petra Björk; Emilia Söderberg; Nafiseh Sabri; Ann-Kristin Ostlund Farrants; Neus Visa
Journal:  Genes Dev       Date:  2005-08-15       Impact factor: 11.361

10.  Exon tethering in transcription by RNA polymerase II.

Authors:  Michael J Dye; Natalia Gromak; Nick J Proudfoot
Journal:  Mol Cell       Date:  2006-03-17       Impact factor: 17.970

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  192 in total

1.  Noncanonical tandem SH2 enables interaction of elongation factor Spt6 with RNA polymerase II.

Authors:  Marie-Laure Diebold; Erin Loeliger; Michael Koch; Fred Winston; Jean Cavarelli; Christophe Romier
Journal:  J Biol Chem       Date:  2010-10-06       Impact factor: 5.157

2.  RiboSys, a high-resolution, quantitative approach to measure the in vivo kinetics of pre-mRNA splicing and 3'-end processing in Saccharomyces cerevisiae.

Authors:  Ross D Alexander; J David Barrass; Beatriz Dichtl; Martin Kos; Tomasz Obtulowicz; Marie-Cecile Robert; Michal Koper; Iwona Karkusiewicz; Luisa Mariconti; David Tollervey; Bernhard Dichtl; Joanna Kufel; Edouard Bertrand; Jean D Beggs
Journal:  RNA       Date:  2010-10-25       Impact factor: 4.942

3.  Ssu72 phosphatase-dependent erasure of phospho-Ser7 marks on the RNA polymerase II C-terminal domain is essential for viability and transcription termination.

Authors:  David W Zhang; Amber L Mosley; Sreenivasa R Ramisetty; Juan B Rodríguez-Molina; Michael P Washburn; Aseem Z Ansari
Journal:  J Biol Chem       Date:  2012-01-10       Impact factor: 5.157

4.  The RNA polymerase C-terminal domain: a new role in spliceosome assembly.

Authors:  Charles J David; James L Manley
Journal:  Transcription       Date:  2011 Sep-Oct

5.  Novel transcript truncating function of Rap1p revealed by synthetic codon-optimized Ty1 retrotransposon.

Authors:  Robert M Yarrington; Sarah M Richardson; Cheng Ran Lisa Huang; Jef D Boeke
Journal:  Genetics       Date:  2011-11-30       Impact factor: 4.562

6.  Export and stability of naturally intronless mRNAs require specific coding region sequences and the TREX mRNA export complex.

Authors:  Haixin Lei; Anusha P Dias; Robin Reed
Journal:  Proc Natl Acad Sci U S A       Date:  2011-10-18       Impact factor: 11.205

7.  Nascent-seq indicates widespread cotranscriptional pre-mRNA splicing in Drosophila.

Authors:  Yevgenia L Khodor; Joseph Rodriguez; Katharine C Abruzzi; Chih-Hang Anthony Tang; Michael T Marr; Michael Rosbash
Journal:  Genes Dev       Date:  2011-12-01       Impact factor: 11.361

8.  Vezf1 protein binding sites genome-wide are associated with pausing of elongating RNA polymerase II.

Authors:  Humaira Gowher; Kevin Brick; R Daniel Camerini-Otero; Gary Felsenfeld
Journal:  Proc Natl Acad Sci U S A       Date:  2012-01-30       Impact factor: 11.205

9.  CTCF: from insulators to alternative splicing regulation.

Authors:  Alberto R Kornblihtt
Journal:  Cell Res       Date:  2012-02-07       Impact factor: 25.617

10.  HIFs enhance the transcriptional activation and splicing of adrenomedullin.

Authors:  Johnny A Sena; Liyi Wang; Matthew R Pawlus; Cheng-Jun Hu
Journal:  Mol Cancer Res       Date:  2014-02-12       Impact factor: 5.852

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