Literature DB >> 22231118

The RNA polymerase C-terminal domain: a new role in spliceosome assembly.

Charles J David1, James L Manley.   

Abstract

Work over the last two decades has provided a wealth of data indicating that the RNA polymerase II transcriptional machinery can play an important role in facilitating the splicing of its transcripts. In particular, the C-terminal domain of the RNA polymerase II large subunit (CTD) is central in the coupling of transcription and splicing. While this has long been assumed to involve physical interactions between splicing factors and the CTD, few functional connections between the CTD and such factors have been established. We recently used a biochemical approach to identify a splicing factor that interacts directly with the CTD to activate splicing and, in doing so, may play a role in the process of spliceosome assembly.

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Year:  2011        PMID: 22231118      PMCID: PMC3265779          DOI: 10.4161/trns.2.5.17272

Source DB:  PubMed          Journal:  Transcription        ISSN: 2154-1272


  41 in total

Review 1.  RNA polymerase II and the integration of nuclear events.

Authors:  Y Hirose; J L Manley
Journal:  Genes Dev       Date:  2000-06-15       Impact factor: 11.361

2.  Participation of the C-terminal domain of RNA polymerase II in exon definition during pre-mRNA splicing.

Authors:  C Zeng; S M Berget
Journal:  Mol Cell Biol       Date:  2000-11       Impact factor: 4.272

3.  The transcription elongation factor CA150 interacts with RNA polymerase II and the pre-mRNA splicing factor SF1.

Authors:  A C Goldstrohm; T R Albrecht; C Suñé; M T Bedford; M A Garcia-Blanco
Journal:  Mol Cell Biol       Date:  2001-11       Impact factor: 4.272

4.  The splicing factor, Prp40, binds the phosphorylated carboxyl-terminal domain of RNA polymerase II.

Authors:  D P Morris; A L Greenleaf
Journal:  J Biol Chem       Date:  2000-12-22       Impact factor: 5.157

5.  Different phosphorylated forms of RNA polymerase II and associated mRNA processing factors during transcription.

Authors:  P Komarnitsky; E J Cho; S Buratowski
Journal:  Genes Dev       Date:  2000-10-01       Impact factor: 11.361

6.  Dynamic association of capping enzymes with transcribing RNA polymerase II.

Authors:  S C Schroeder; B Schwer; S Shuman; D Bentley
Journal:  Genes Dev       Date:  2000-10-01       Impact factor: 11.361

7.  A slow RNA polymerase II affects alternative splicing in vivo.

Authors:  Manuel de la Mata; Claudio R Alonso; Sebastián Kadener; Juan P Fededa; Matías Blaustein; Federico Pelisch; Paula Cramer; David Bentley; Alberto R Kornblihtt
Journal:  Mol Cell       Date:  2003-08       Impact factor: 17.970

8.  Steroid hormone receptor coactivation and alternative RNA splicing by U2AF65-related proteins CAPERalpha and CAPERbeta.

Authors:  Dennis H Dowhan; Eugene P Hong; Didier Auboeuf; Andrew P Dennis; Michelle M Wilson; Susan M Berget; Bert W O'Malley
Journal:  Mol Cell       Date:  2005-02-04       Impact factor: 17.970

9.  Small nuclear ribonucleoprotein remodeling during catalytic activation of the spliceosome.

Authors:  Evgeny M Makarov; Olga V Makarova; Henning Urlaub; Marc Gentzel; Cindy L Will; Matthias Wilm; Reinhard Lührmann
Journal:  Science       Date:  2002-10-31       Impact factor: 47.728

10.  Splicing and transcription-associated proteins PSF and p54nrb/nonO bind to the RNA polymerase II CTD.

Authors:  Andrew Emili; Michael Shales; Susan McCracken; Weijun Xie; Philip W Tucker; Ryuji Kobayashi; Benjamin J Blencowe; C James Ingles
Journal:  RNA       Date:  2002-09       Impact factor: 4.942

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  13 in total

Review 1.  RNA polymerase II transcription elongation control.

Authors:  Jiannan Guo; David H Price
Journal:  Chem Rev       Date:  2013-08-06       Impact factor: 60.622

Review 2.  RNA polymerase II C-terminal domain: Tethering transcription to transcript and template.

Authors:  Jeffry L Corden
Journal:  Chem Rev       Date:  2013-09-16       Impact factor: 60.622

Review 3.  Mechanisms and Regulation of Alternative Pre-mRNA Splicing.

Authors:  Yeon Lee; Donald C Rio
Journal:  Annu Rev Biochem       Date:  2015-03-12       Impact factor: 23.643

Review 4.  The RNA polymerase II CTD coordinates transcription and RNA processing.

Authors:  Jing-Ping Hsin; James L Manley
Journal:  Genes Dev       Date:  2012-10-01       Impact factor: 11.361

Review 5.  Dynamic integration of splicing within gene regulatory pathways.

Authors:  Ulrich Braunschweig; Serge Gueroussov; Alex M Plocik; Brenton R Graveley; Benjamin J Blencowe
Journal:  Cell       Date:  2013-03-14       Impact factor: 41.582

Review 6.  Diverse and conserved roles of the protein Ssu72 in eukaryotes: from yeast to higher organisms.

Authors:  Changfu Liu; Weihao Zhang; Wenge Xing
Journal:  Curr Genet       Date:  2020-11-26       Impact factor: 3.886

7.  A splicing-dependent transcriptional checkpoint associated with prespliceosome formation.

Authors:  Keerthi T Chathoth; J David Barrass; Shaun Webb; Jean D Beggs
Journal:  Mol Cell       Date:  2014-02-20       Impact factor: 17.970

8.  Widespread intron retention in mammals functionally tunes transcriptomes.

Authors:  Ulrich Braunschweig; Nuno L Barbosa-Morais; Qun Pan; Emil N Nachman; Babak Alipanahi; Thomas Gonatopoulos-Pournatzis; Brendan Frey; Manuel Irimia; Benjamin J Blencowe
Journal:  Genome Res       Date:  2014-09-25       Impact factor: 9.043

9.  A nuclear proteome localization screen reveals the exquisite specificity of Gpn2 in RNA polymerase biogenesis.

Authors:  Sean W Minaker; Megan C Kofoed; Philip Hieter; Peter C Stirling
Journal:  Cell Cycle       Date:  2021-06-28       Impact factor: 5.173

10.  LEDGF/p75 interacts with mRNA splicing factors and targets HIV-1 integration to highly spliced genes.

Authors:  Parmit Kumar Singh; Matthew R Plumb; Andrea L Ferris; James R Iben; Xiaolin Wu; Hind J Fadel; Brian T Luke; Caroline Esnault; Eric M Poeschla; Stephen H Hughes; Mamuka Kvaratskhelia; Henry L Levin
Journal:  Genes Dev       Date:  2015-11-01       Impact factor: 11.361

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