Literature DB >> 16204182

RNA Pol II subunit Rpb7 promotes centromeric transcription and RNAi-directed chromatin silencing.

Ingela Djupedal1, Manuela Portoso, Henrik Spåhr, Carolina Bonilla, Claes M Gustafsson, Robin C Allshire, Karl Ekwall.   

Abstract

Fission yeast centromeric repeats are transcribed into small interfering RNA (siRNA) precursors (pre-siRNAs), which are processed by Dicer to direct heterochromatin formation. Recently, Rpb1 and Rpb2 subunits of RNA polymerase II (RNA Pol II) were shown to mediate RNA interference (RNAi)-directed chromatin modification but did not affect pre-siRNA levels. Here we show that another Pol II subunit, Rpb7 has a specific role in pre-siRNA transcription. We define a centromeric pre-siRNA promoter from which initiation is exquisitely sensitive to the rpb7-G150D mutation. In contrast to other Pol II subunits, Rpb7 promotes pre-siRNA transcription required for RNAi-directed chromatin silencing.

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Year:  2005        PMID: 16204182      PMCID: PMC1240039          DOI: 10.1101/gad.344205

Source DB:  PubMed          Journal:  Genes Dev        ISSN: 0890-9369            Impact factor:   11.361


  34 in total

1.  RNAi: double-stranded RNA directs the ATP-dependent cleavage of mRNA at 21 to 23 nucleotide intervals.

Authors:  P D Zamore; T Tuschl; P A Sharp; D P Bartel
Journal:  Cell       Date:  2000-03-31       Impact factor: 41.582

2.  Structure of an archaeal homolog of the eukaryotic RNA polymerase II RPB4/RPB7 complex.

Authors:  F Todone; P Brick; F Werner; R O Weinzierl; S Onesti
Journal:  Mol Cell       Date:  2001-11       Impact factor: 17.970

3.  Requirement of heterochromatin for cohesion at centromeres.

Authors:  P Bernard; J F Maure; J F Partridge; S Genier; J P Javerzat; R C Allshire
Journal:  Science       Date:  2001-10-11       Impact factor: 47.728

4.  Small RNAs correspond to centromere heterochromatic repeats.

Authors:  Brenda J Reinhart; David P Bartel
Journal:  Science       Date:  2002-08-22       Impact factor: 47.728

5.  RNA polymerase II is required for RNAi-dependent heterochromatin assembly.

Authors:  Hiroaki Kato; Derek B Goto; Robert A Martienssen; Takeshi Urano; Koichi Furukawa; Yota Murakami
Journal:  Science       Date:  2005-06-09       Impact factor: 47.728

6.  RNA-interference-directed chromatin modification coupled to RNA polymerase II transcription.

Authors:  Vera Schramke; Daniel M Sheedy; Ahmet M Denli; Carolina Bonila; Karl Ekwall; Gregory J Hannon; Robin C Allshire
Journal:  Nature       Date:  2005-06-19       Impact factor: 49.962

7.  Role for a bidentate ribonuclease in the initiation step of RNA interference.

Authors:  E Bernstein; A A Caudy; S M Hammond; G J Hannon
Journal:  Nature       Date:  2001-01-18       Impact factor: 49.962

8.  RNAi related mechanisms affect both transcriptional and posttranscriptional transgene silencing in Drosophila.

Authors:  Manika Pal-Bhadra; Utpal Bhadra; James A Birchler
Journal:  Mol Cell       Date:  2002-02       Impact factor: 17.970

9.  Regulation of heterochromatic silencing and histone H3 lysine-9 methylation by RNAi.

Authors:  Thomas A Volpe; Catherine Kidner; Ira M Hall; Grace Teng; Shiv I S Grewal; Robert A Martienssen
Journal:  Science       Date:  2002-08-22       Impact factor: 47.728

10.  Live analysis of lagging chromosomes during anaphase and their effect on spindle elongation rate in fission yeast.

Authors:  A L Pidoux; S Uzawa; P E Perry; W Z Cande; R C Allshire
Journal:  J Cell Sci       Date:  2000-12       Impact factor: 5.285

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  117 in total

Review 1.  Male germline control of transposable elements.

Authors:  Jianqiang Bao; Wei Yan
Journal:  Biol Reprod       Date:  2012-05-31       Impact factor: 4.285

Review 2.  No longer a nuisance: long non-coding RNAs join CENP-A in epigenetic centromere regulation.

Authors:  Silvana Rošić; Sylvia Erhardt
Journal:  Cell Mol Life Sci       Date:  2016-01-09       Impact factor: 9.261

3.  Conserved factor Dhp1/Rat1/Xrn2 triggers premature transcription termination and nucleates heterochromatin to promote gene silencing.

Authors:  Venkata R Chalamcharla; H Diego Folco; Jothy Dhakshnamoorthy; Shiv I S Grewal
Journal:  Proc Natl Acad Sci U S A       Date:  2015-12-02       Impact factor: 11.205

4.  The Conserved RNA Binding Cyclophilin, Rct1, Regulates Small RNA Biogenesis and Splicing Independent of Heterochromatin Assembly.

Authors:  An-Yun Chang; Stephane E Castel; Evan Ernst; Hyun Soo Kim; Robert A Martienssen
Journal:  Cell Rep       Date:  2017-06-20       Impact factor: 9.423

Review 5.  The contradictory definitions of heterochromatin: transcription and silencing.

Authors:  Kathryn L Huisinga; Brent Brower-Toland; Sarah C R Elgin
Journal:  Chromosoma       Date:  2006-02-28       Impact factor: 4.316

6.  Fission yeast Cid12 has dual functions in chromosome segregation and checkpoint control.

Authors:  Thein Z Win; Abigail L Stevenson; Shao-Win Wang
Journal:  Mol Cell Biol       Date:  2006-06       Impact factor: 4.272

7.  CPF Recruitment to Non-canonical Transcription Termination Sites Triggers Heterochromatin Assembly and Gene Silencing.

Authors:  Tommy V Vo; Jothy Dhakshnamoorthy; Madeline Larkin; Martin Zofall; Gobi Thillainadesan; Vanivilasini Balachandran; Sahana Holla; David Wheeler; Shiv I S Grewal
Journal:  Cell Rep       Date:  2019-07-02       Impact factor: 9.423

Review 8.  Origins and Mechanisms of miRNAs and siRNAs.

Authors:  Richard W Carthew; Erik J Sontheimer
Journal:  Cell       Date:  2009-02-20       Impact factor: 41.582

Review 9.  RNA interference in the nucleus: roles for small RNAs in transcription, epigenetics and beyond.

Authors:  Stephane E Castel; Robert A Martienssen
Journal:  Nat Rev Genet       Date:  2013-02       Impact factor: 53.242

10.  qiRNA is a new type of small interfering RNA induced by DNA damage.

Authors:  Heng-Chi Lee; Shwu-Shin Chang; Swati Choudhary; Antti P Aalto; Mekhala Maiti; Dennis H Bamford; Yi Liu
Journal:  Nature       Date:  2009-05-14       Impact factor: 49.962

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