Literature DB >> 22010220

Export and stability of naturally intronless mRNAs require specific coding region sequences and the TREX mRNA export complex.

Haixin Lei1, Anusha P Dias, Robin Reed.   

Abstract

A great deal is known about the export of spliced mRNAs, but little is known about the export of mRNAs encoded by human cellular genes that naturally lack introns. Here, we investigated the requirements for export of three naturally intronless mRNAs (HSPB3, IFN-α1, and IFN-β1). Significantly, we found that all three mRNAs are stable and accumulate in the cytoplasm, whereas size-matched random RNAs are unstable and detected only in the nucleus. A portion of the coding region confers this stability and cytoplasmic localization on the naturally intronless mRNAs and a cDNA transcript, which is normally retained in the nucleus and degraded. A polyadenylation signal, TREX mRNA export components, and the mRNA export receptor TAP are required for accumulation of the naturally intronless mRNAs in the cytoplasm. We conclude that naturally intronless mRNAs contain specific sequences that result in efficient packaging into the TREX mRNA export complex, thereby supplanting the splicing requirement for efficient mRNA export.

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Year:  2011        PMID: 22010220      PMCID: PMC3207654          DOI: 10.1073/pnas.1113076108

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  51 in total

Review 1.  An extensive network of coupling among gene expression machines.

Authors:  Tom Maniatis; Robin Reed
Journal:  Nature       Date:  2002-04-04       Impact factor: 49.962

Review 2.  RNA export: searching for mRNA identity.

Authors:  Katharine S Ullman
Journal:  Curr Biol       Date:  2002-07-09       Impact factor: 10.834

3.  Stable mRNP formation and export require cotranscriptional recruitment of the mRNA export factors Yra1p and Sub2p by Hpr1p.

Authors:  Daniel Zenklusen; Patrizia Vinciguerra; Jean-Christophe Wyss; Françoise Stutz
Journal:  Mol Cell Biol       Date:  2002-12       Impact factor: 4.272

4.  Interactions between mRNA export commitment, 3'-end quality control, and nuclear degradation.

Authors:  Domenico Libri; Ken Dower; Jocelyne Boulay; Rune Thomsen; Michael Rosbash; Torben Heick Jensen
Journal:  Mol Cell Biol       Date:  2002-12       Impact factor: 4.272

5.  ICP27 interacts with the RNA export factor Aly/REF to direct herpes simplex virus type 1 intronless mRNAs to the TAP export pathway.

Authors:  I-Hsiung Brandon Chen; Kathryn S Sciabica; Rozanne M Sandri-Goldin
Journal:  J Virol       Date:  2002-12       Impact factor: 5.103

6.  A quantitative analysis of intron effects on mammalian gene expression.

Authors:  Ajit Nott; Shlomo H Meislin; Melissa J Moore
Journal:  RNA       Date:  2003-05       Impact factor: 4.942

7.  Analysis of the stimulatory effect of splicing on mRNA production and utilization in mammalian cells.

Authors:  Shihua Lu; Bryan R Cullen
Journal:  RNA       Date:  2003-05       Impact factor: 4.942

8.  SR splicing factors serve as adapter proteins for TAP-dependent mRNA export.

Authors:  Yingqun Huang; Renata Gattoni; James Stévenin; Joan A Steitz
Journal:  Mol Cell       Date:  2003-03       Impact factor: 17.970

9.  The Glc7p nuclear phosphatase promotes mRNA export by facilitating association of Mex67p with mRNA.

Authors:  Wendy Gilbert; Christine Guthrie
Journal:  Mol Cell       Date:  2004-01-30       Impact factor: 17.970

10.  Poly(A)+ RNAs roam the cell nucleus and pass through speckle domains in transcriptionally active and inactive cells.

Authors:  Chris Molenaar; Abadir Abdulle; Aarti Gena; Hans J Tanke; Roeland W Dirks
Journal:  J Cell Biol       Date:  2004-04-26       Impact factor: 10.539

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  51 in total

1.  Viral factors reveal a role for REF/Aly in nuclear RNA stability.

Authors:  Sarah H Stubbs; Olga V Hunter; Ashley Hoover; Nicholas K Conrad
Journal:  Mol Cell Biol       Date:  2012-01-30       Impact factor: 4.272

2.  Hidden treasures in unspliced EST data.

Authors:  J Engelhardt; P F Stadler
Journal:  Theory Biosci       Date:  2012-04-08       Impact factor: 1.919

3.  HuR antagonizes the effect of an intronic pyrimidine-rich sequence in regulating WT1 +/-KTS isoforms.

Authors:  Hui Li; Shuai Hou; Tian Hao; Sikandar Azam; Caigang Liu; Lei Shi; Haixin Lei
Journal:  RNA Biol       Date:  2015       Impact factor: 4.652

4.  Nuclear retention element recruits U1 snRNP components to restrain spliced lncRNAs in the nucleus.

Authors:  Sikandar Azam; Shuai Hou; Baohui Zhu; Weijie Wang; Tian Hao; Xiangxue Bu; Misbah Khan; Haixin Lei
Journal:  RNA Biol       Date:  2019-06-04       Impact factor: 4.652

5.  Exosome cofactor hMTR4 competes with export adaptor ALYREF to ensure balanced nuclear RNA pools for degradation and export.

Authors:  Jing Fan; Bin Kuai; Guifen Wu; Xudong Wu; Binkai Chi; Lantian Wang; Ke Wang; Zhubing Shi; Heng Zhang; She Chen; Zhisong He; Siyuan Wang; Zhaocai Zhou; Guohui Li; Hong Cheng
Journal:  EMBO J       Date:  2017-08-11       Impact factor: 11.598

6.  Chtop is a component of the dynamic TREX mRNA export complex.

Authors:  Chung-Te Chang; Guillaume M Hautbergue; Matthew J Walsh; Nicolas Viphakone; Thamar B van Dijk; Sjaak Philipsen; Stuart A Wilson
Journal:  EMBO J       Date:  2013-01-08       Impact factor: 11.598

Review 7.  How cells get the message: dynamic assembly and function of mRNA-protein complexes.

Authors:  Michaela Müller-McNicoll; Karla M Neugebauer
Journal:  Nat Rev Genet       Date:  2013-03-12       Impact factor: 53.242

8.  A novel RNA motif mediates the strict nuclear localization of a long noncoding RNA.

Authors:  Bing Zhang; Lalith Gunawardane; Farshad Niazi; Fereshteh Jahanbani; Xin Chen; Saba Valadkhan
Journal:  Mol Cell Biol       Date:  2014-04-14       Impact factor: 4.272

Review 9.  Dynamic integration of splicing within gene regulatory pathways.

Authors:  Ulrich Braunschweig; Serge Gueroussov; Alex M Plocik; Brenton R Graveley; Benjamin J Blencowe
Journal:  Cell       Date:  2013-03-14       Impact factor: 41.582

Review 10.  Aiding and abetting cancer: mRNA export and the nuclear pore.

Authors:  Biljana Culjkovic-Kraljacic; Katherine L B Borden
Journal:  Trends Cell Biol       Date:  2013-04-10       Impact factor: 20.808

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