Literature DB >> 16689632

RNA folding during transcription.

Tao Pan1, Tobin Sosnick.   

Abstract

The evolution of RNA sequence needs to satisfy three requirements: folding, structure, and function. Studies on folding during transcription are related directly to folding in the cell. Understanding RNA folding during transcription requires the elucidation of structure formation and structural changes of the RNA, and the consideration of intrinsic properties of the RNA polymerase and other proteins that interact with the RNA. This review summarizes the research progress in this area and outlines the enormous challenges facing this field. Significant advancement requires the development of new experimental methods and theoretical considerations in all aspects of transcription and RNA folding.

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Year:  2006        PMID: 16689632     DOI: 10.1146/annurev.biophys.35.040405.102053

Source DB:  PubMed          Journal:  Annu Rev Biophys Biomol Struct        ISSN: 1056-8700


  113 in total

1.  Visualizing large RNA molecules in solution.

Authors:  Ajaykumar Gopal; Z Hong Zhou; Charles M Knobler; William M Gelbart
Journal:  RNA       Date:  2011-12-21       Impact factor: 4.942

2.  Cotranscriptional folding kinetics of ribonucleic acid secondary structures.

Authors:  Peinan Zhao; Wenbing Zhang; Shi-Jie Chen
Journal:  J Chem Phys       Date:  2011-12-28       Impact factor: 3.488

3.  Predicting secondary structural folding kinetics for nucleic acids.

Authors:  Peinan Zhao; Wen-Bing Zhang; Shi-Jie Chen
Journal:  Biophys J       Date:  2010-04-21       Impact factor: 4.033

4.  BarMap: RNA folding on dynamic energy landscapes.

Authors:  Ivo L Hofacker; Christoph Flamm; Christian Heine; Michael T Wolfinger; Gerik Scheuermann; Peter F Stadler
Journal:  RNA       Date:  2010-05-26       Impact factor: 4.942

5.  The human HDV-like CPEB3 ribozyme is intrinsically fast-reacting.

Authors:  Durga M Chadalavada; Elizabeth A Gratton; Philip C Bevilacqua
Journal:  Biochemistry       Date:  2010-06-29       Impact factor: 3.162

Review 6.  Roles of DEAD-box proteins in RNA and RNP Folding.

Authors:  Cynthia Pan; Rick Russell
Journal:  RNA Biol       Date:  2010-11-01       Impact factor: 4.652

Review 7.  Taming free energy landscapes with RNA chaperones.

Authors:  Sarah A Woodson
Journal:  RNA Biol       Date:  2010-11-01       Impact factor: 4.652

Review 8.  RNA folding in living cells.

Authors:  Georgeta Zemora; Christina Waldsich
Journal:  RNA Biol       Date:  2010-11-01       Impact factor: 4.652

9.  Transient Protein-RNA Interactions Guide Nascent Ribosomal RNA Folding.

Authors:  Olivier Duss; Galina A Stepanyuk; Joseph D Puglisi; James R Williamson
Journal:  Cell       Date:  2019-11-21       Impact factor: 41.582

10.  The role of a metastable RNA secondary structure in hepatitis delta virus genotype III RNA editing.

Authors:  Sarah D Linnstaedt; Wojciech K Kasprzak; Bruce A Shapiro; John L Casey
Journal:  RNA       Date:  2006-06-21       Impact factor: 4.942

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