Literature DB >> 22310241

CTCF: from insulators to alternative splicing regulation.

Alberto R Kornblihtt1.   

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Year:  2012        PMID： 22310241      PMCID： PMC3292291          DOI： 10.1038/cr.2012.22

Source DB:  PubMed          Journal:  Cell Res        ISSN： 1001-0602            Impact factor:   25.617


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  19 in total

1.  A slow RNA polymerase II affects alternative splicing in vivo.

Authors:  Manuel de la Mata; Claudio R Alonso; Sebastián Kadener; Juan P Fededa; Matías Blaustein; Federico Pelisch; Paula Cramer; David Bentley; Alberto R Kornblihtt
Journal:  Mol Cell       Date:  2003-08       Impact factor: 17.970

2.  The human SWI/SNF subunit Brm is a regulator of alternative splicing.

Authors:  Eric Batsché; Moshe Yaniv; Christian Muchardt
Journal:  Nat Struct Mol Biol       Date:  2005-12-11       Impact factor: 15.369

3.  When chromatin meets splicing.

Authors:  Alberto R Kornblihtt; Ignacio E Schor; Mariano Allo; Benjamin J Blencowe
Journal:  Nat Struct Mol Biol       Date:  2009-09       Impact factor: 15.369

Review 4.  Coupling transcription and alternative splicing.

Authors:  Alberto R Kornblihtt
Journal:  Adv Exp Med Biol       Date:  2007       Impact factor: 2.622

5.  CTCF-promoted RNA polymerase II pausing links DNA methylation to splicing.

Authors:  Sanjeev Shukla; Ersen Kavak; Melissa Gregory; Masahiko Imashimizu; Bojan Shutinoski; Mikhail Kashlev; Philipp Oberdoerffer; Rickard Sandberg; Shalini Oberdoerffer
Journal:  Nature       Date:  2011-11-03       Impact factor: 49.962

6.  Genome-scale DNA methylation maps of pluripotent and differentiated cells.

Authors:  Alexander Meissner; Tarjei S Mikkelsen; Hongcang Gu; Marius Wernig; Jacob Hanna; Andrey Sivachenko; Xiaolan Zhang; Bradley E Bernstein; Chad Nusbaum; David B Jaffe; Andreas Gnirke; Rudolf Jaenisch; Eric S Lander
Journal:  Nature       Date:  2008-07-06       Impact factor: 49.962

7.  Control of alternative splicing through siRNA-mediated transcriptional gene silencing.

Authors:  Mariano Alló; Valeria Buggiano; Juan P Fededa; Ezequiel Petrillo; Ignacio Schor; Manuel de la Mata; Eneritz Agirre; Mireya Plass; Eduardo Eyras; Sherif Abou Elela; Roscoe Klinck; Benoit Chabot; Alberto R Kornblihtt
Journal:  Nat Struct Mol Biol       Date:  2009-06-21       Impact factor: 15.369

8.  Neuronal cell depolarization induces intragenic chromatin modifications affecting NCAM alternative splicing.

Authors:  Ignacio E Schor; Nicolás Rascovan; Federico Pelisch; Mariano Alló; Alberto R Kornblihtt
Journal:  Proc Natl Acad Sci U S A       Date:  2009-02-26       Impact factor: 11.205

9.  Differential chromatin marking of introns and expressed exons by H3K36me3.

Authors:  Paulina Kolasinska-Zwierz; Thomas Down; Isabel Latorre; Tao Liu; X Shirley Liu; Julie Ahringer
Journal:  Nat Genet       Date:  2009-02-01       Impact factor: 38.330

10.  Nucleosomal fluctuations govern the transcription dynamics of RNA polymerase II.

Authors:  Courtney Hodges; Lacramioara Bintu; Lucyna Lubkowska; Mikhail Kashlev; Carlos Bustamante
Journal:  Science       Date:  2009-07-31       Impact factor: 47.728
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  13 in total

Review 1.  Human telomerase reverse transcriptase regulation by DNA methylation, transcription factor binding and alternative splicing (Review).

Authors:  Brittany A Avin; Christopher B Umbricht; Martha A Zeiger
Journal:  Int J Oncol       Date:  2016-10-20       Impact factor: 5.650

2.  Novel role of prostate cancer risk variant rs7247241 on PPP1R14A isoform transition through allelic TF binding and CpG methylation.

Authors:  Yijun Tian; Alex Soupir; Qian Liu; Lang Wu; Chiang-Ching Huang; Jong Y Park; Liang Wang
Journal:  Hum Mol Genet       Date:  2022-05-19       Impact factor: 5.121

3.  Remote Memory and Cortical Synaptic Plasticity Require Neuronal CCCTC-Binding Factor (CTCF).

Authors:  Somi Kim; Nam-Kyung Yu; Kyu-Won Shim; Ji-Il Kim; Hyopil Kim; Dae Hee Han; Ja Eun Choi; Seung-Woo Lee; Dong Il Choi; Myung Won Kim; Dong-Sung Lee; Kyungmin Lee; Niels Galjart; Yong-Seok Lee; Jae-Hyung Lee; Bong-Kiun Kaang
Journal:  J Neurosci       Date:  2018-04-30       Impact factor: 6.167

4.  SLC45A3-ELK4 chimera in prostate cancer: spotlight on cis-splicing.

Authors:  Chandan Kumar-Sinha; Shanker Kalyana-Sundaram; Arul M Chinnaiyan
Journal:  Cancer Discov       Date:  2012-07       Impact factor: 39.397

5.  A chromatin code for alternative splicing involving a putative association between CTCF and HP1α proteins.

Authors:  Eneritz Agirre; Nicolás Bellora; Mariano Alló; Amadís Pagès; Paola Bertucci; Alberto R Kornblihtt; Eduardo Eyras
Journal:  BMC Biol       Date:  2015-05-02       Impact factor: 7.431

Review 6.  DNA modifications: function and applications in normal and disease States.

Authors:  Vichithra R B Liyanage; Jessica S Jarmasz; Nanditha Murugeshan; Marc R Del Bigio; Mojgan Rastegar; James R Davie
Journal:  Biology (Basel)       Date:  2014-10-22

7.  Maternal Smoking during Pregnancy and DNA-Methylation in Children at Age 5.5 Years: Epigenome-Wide-Analysis in the European Childhood Obesity Project (CHOP)-Study.

Authors:  Peter Rzehak; Richard Saffery; Eva Reischl; Marcela Covic; Simone Wahl; Veit Grote; Annick Xhonneux; Jean-Paul Langhendries; Natalia Ferre; Ricardo Closa-Monasterolo; Elvira Verduci; Enrica Riva; Piotr Socha; Dariusz Gruszfeld; Berthold Koletzko
Journal:  PLoS One       Date:  2016-05-12       Impact factor: 3.240

8.  Genome analysis of three Pneumocystis species reveals adaptation mechanisms to life exclusively in mammalian hosts.

Authors:  Liang Ma; Zehua Chen; Da Wei Huang; Geetha Kutty; Mayumi Ishihara; Honghui Wang; Amr Abouelleil; Lisa Bishop; Emma Davey; Rebecca Deng; Xilong Deng; Lin Fan; Giovanna Fantoni; Michael Fitzgerald; Emile Gogineni; Jonathan M Goldberg; Grace Handley; Xiaojun Hu; Charles Huber; Xiaoli Jiao; Kristine Jones; Joshua Z Levin; Yueqin Liu; Pendexter Macdonald; Alexandre Melnikov; Castle Raley; Monica Sassi; Brad T Sherman; Xiaohong Song; Sean Sykes; Bao Tran; Laura Walsh; Yun Xia; Jun Yang; Sarah Young; Qiandong Zeng; Xin Zheng; Robert Stephens; Chad Nusbaum; Bruce W Birren; Parastoo Azadi; Richard A Lempicki; Christina A Cuomo; Joseph A Kovacs
Journal:  Nat Commun       Date:  2016-02-22       Impact factor: 14.919

Review 9.  Computational tools and resources for prediction and analysis of gene regulatory regions in the chick genome.

Authors:  Mohsin A F Khan; Luz Mayela Soto-Jimenez; Timothy Howe; Andrea Streit; Alona Sosinsky; Claudio D Stern
Journal:  Genesis       Date:  2013-03-30       Impact factor: 2.487

10.  RNA Splicing Factors and RNA-Directed DNA Methylation.

Authors:  Chao-Feng Huang; Jian-Kang Zhu
Journal:  Biology (Basel)       Date:  2014-03-26
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