Literature DB >> 19751683

Direct observation of downhill folding of lambda-repressor in a microfluidic mixer.

Stephen J DeCamp1, Athi N Naganathan, Steven A Waldauer, Olgica Bakajin, Lisa J Lapidus.   

Abstract

The protein lambda(6-85) has been implicated in barrierless folding by observations of kinetic relaxation after nanosecond T-jump. In this work we observed folding of this protein after dilution of a high denaturant in an ultrarapid microfluidic mixer at temperatures far below the thermal midpoint. The observations of total intensity and spectral shift of tryptophan fluorescence yielded distinctly different kinetics and activation energies. These results may be explained as diffusion on a low-barrier, one-dimensional, free-energy surface, with different probes having different sensitivities along the reaction coordinate. Additionally, we observed an extremely fast phase within the mixing time that was not observed by T-jump, suggesting that the ensemble of unfolded states populated at high denaturant is distinct from those accessible at high temperature.

Entities:  

Mesh:

Substances:

Year:  2009        PMID: 19751683      PMCID: PMC2749784          DOI: 10.1016/j.bpj.2009.07.003

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  25 in total

1.  Protein Structure and the Energetics of Protein Stability.

Authors:  Andrew D. Robertson; Kenneth P. Murphy
Journal:  Chem Rev       Date:  1997-08-05       Impact factor: 60.622

2.  Femtomole mixer for microsecond kinetic studies of protein folding.

Authors:  David E Hertzog; Xavier Michalet; Marcus Jäger; Xiangxu Kong; Juan G Santiago; Shimon Weiss; Olgica Bakajin
Journal:  Anal Chem       Date:  2004-12-15       Impact factor: 6.986

3.  Solvent-tuning the collapse and helix formation time scales of lambda(6-85)*.

Authors:  Charles Dumont; Yoshitaka Matsumura; Seung Joong Kim; Jinsong Li; Elena Kondrashkina; Hiroshi Kihara; Martin Gruebele
Journal:  Protein Sci       Date:  2006-11       Impact factor: 6.725

4.  Tuning lambda6-85 towards downhill folding at its melting temperature.

Authors:  Feng Liu; Martin Gruebele
Journal:  J Mol Biol       Date:  2007-04-19       Impact factor: 5.469

5.  Protein hydrophobic collapse and early folding steps observed in a microfluidic mixer.

Authors:  Lisa J Lapidus; Shuhuai Yao; Kimberly S McGarrity; David E Hertzog; Emily Tubman; Olgica Bakajin
Journal:  Biophys J       Date:  2007-04-06       Impact factor: 4.033

6.  Protein folding kinetics: barrier effects in chemical and thermal denaturation experiments.

Authors:  Athi N Naganathan; Urmi Doshi; Victor Muñoz
Journal:  J Am Chem Soc       Date:  2007-04-10       Impact factor: 15.419

7.  Comment on Probe-dependent and nonexponential relaxation kinetics: unreliable signatures of downhill protein folding.

Authors:  Martin Gruebele
Journal:  Proteins       Date:  2008-02-15

8.  Ruggedness in the folding landscape of protein L.

Authors:  Steven A Waldauer; Olgica Bakajin; Terry Ball; Yujie Chen; Stephen J Decamp; Michaela Kopka; Marcus Jäger; Vijay R Singh; William J Wedemeyer; Shimon Weiss; Shuhuai Yao; Lisa J Lapidus
Journal:  HFSP J       Date:  2008-11-14

9.  Variationally determined free energy profiles for structural models of proteins: characteristic temperatures for folding and trapping.

Authors:  Tongye Shen; Chenghang Zong; John J Portman; Peter G Wolynes
Journal:  J Phys Chem B       Date:  2008-04-01       Impact factor: 2.991

10.  Dynamic similarity of the unfolded states of proteins L and G.

Authors:  Vijay R Singh; Michaela Kopka; Yujie Chen; William J Wedemeyer; Lisa J Lapidus
Journal:  Biochemistry       Date:  2007-08-08       Impact factor: 3.162

View more
  20 in total

1.  Atomistic folding simulations of the five-helix bundle protein λ(6−85).

Authors:  Gregory R Bowman; Vincent A Voelz; Vijay S Pande
Journal:  J Am Chem Soc       Date:  2011-02-02       Impact factor: 15.419

2.  The fast and the slow: folding and trapping of λ6-85.

Authors:  Maxim B Prigozhin; Martin Gruebele
Journal:  J Am Chem Soc       Date:  2011-11-14       Impact factor: 15.419

3.  Complex pathways in folding of protein G explored by simulation and experiment.

Authors:  Lisa J Lapidus; Srabasti Acharya; Christian R Schwantes; Ling Wu; Diwakar Shukla; Michael King; Stephen J DeCamp; Vijay S Pande
Journal:  Biophys J       Date:  2014-08-19       Impact factor: 4.033

4.  Cooperative folding near the downhill limit determined with amino acid resolution by hydrogen exchange.

Authors:  Wookyung Yu; Michael C Baxa; Isabelle Gagnon; Karl F Freed; Tobin R Sosnick
Journal:  Proc Natl Acad Sci U S A       Date:  2016-04-13       Impact factor: 11.205

5.  Crowding effects on the small, fast-folding protein lambda6-85.

Authors:  Sharlene Denos; Apratim Dhar; Martin Gruebele
Journal:  Faraday Discuss       Date:  2012       Impact factor: 4.008

6.  Dodine as a protein denaturant: the best of two worlds?

Authors:  Hannah Gelman; Tatyana Perlova; Martin Gruebele
Journal:  J Phys Chem B       Date:  2013-08-16       Impact factor: 2.991

Review 7.  The folding of single domain proteins--have we reached a consensus?

Authors:  Tobin R Sosnick; Doug Barrick
Journal:  Curr Opin Struct Biol       Date:  2010-12-06       Impact factor: 6.809

8.  A survey of lambda repressor fragments from two-state to downhill folding.

Authors:  Feng Liu; Yi Gui Gao; Martin Gruebele
Journal:  J Mol Biol       Date:  2010-02-06       Impact factor: 5.469

9.  Microsecond folding experiments and simulations: a match is made.

Authors:  M B Prigozhin; M Gruebele
Journal:  Phys Chem Chem Phys       Date:  2013-01-29       Impact factor: 3.676

Review 10.  Fast protein folding kinetics.

Authors:  Hannah Gelman; Martin Gruebele
Journal:  Q Rev Biophys       Date:  2014-03-18       Impact factor: 5.318

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.