Literature DB >> 20138892

A survey of lambda repressor fragments from two-state to downhill folding.

Feng Liu1, Yi Gui Gao, Martin Gruebele.   

Abstract

We survey the two-state to downhill folding transition by examining 20 lambda(6-85)* mutants that cover a wide range of stabilities and folding rates. We investigated four new lambda(6-85)* mutants designed to fold especially rapidly. Two were engineered using the core remodeling of Lim and Sauer, and two were engineered using Ferreiro et al.'s frustratometer. These proteins have probe-dependent melting temperatures as high as 80 degrees C and exhibit a fast molecular phase with the characteristic temperature dependence of the amplitude expected for downhill folding. The survey reveals a correlation between melting temperature and downhill folding previously observed for the beta-sheet protein WW domain. A simple model explains this correlation and predicts the melting temperature at which downhill folding becomes possible. An X-ray crystal structure with a 1.64-A resolution of a fast-folding mutant fragment shows regions of enhanced rigidity compared to the full wild-type protein. Copyright 2010 Elsevier Ltd. All rights reserved.

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Year:  2010        PMID: 20138892      PMCID: PMC3740950          DOI: 10.1016/j.jmb.2010.01.071

Source DB:  PubMed          Journal:  J Mol Biol        ISSN: 0022-2836            Impact factor:   5.469


  43 in total

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Review 6.  The protein folding 'speed limit'.

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Journal:  Curr Opin Struct Biol       Date:  2004-02       Impact factor: 6.809

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Journal:  Biochemistry       Date:  2004-10-19       Impact factor: 3.162

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  20 in total

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Journal:  J Am Chem Soc       Date:  2011-02-02       Impact factor: 15.419

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6.  The Surface of Protein λ6-85 Can Act as a Template for Recurring Poly(ethylene glycol) Structure.

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7.  Mapping fast protein folding with multiple-site fluorescent probes.

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8.  Misplaced helix slows down ultrafast pressure-jump protein folding.

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9.  Structural Characterization of λ-Repressor Folding from All-Atom Molecular Dynamics Simulations.

Authors:  Yanxin Liu; Johan Strümpfer; Peter L Freddolino; Martin Gruebele; Klaus Schulten
Journal:  J Phys Chem Lett       Date:  2012-04-11       Impact factor: 6.475

10.  Cooperative folding near the downhill limit determined with amino acid resolution by hydrogen exchange.

Authors:  Wookyung Yu; Michael C Baxa; Isabelle Gagnon; Karl F Freed; Tobin R Sosnick
Journal:  Proc Natl Acad Sci U S A       Date:  2016-04-13       Impact factor: 11.205

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