Literature DB >> 17532338

Tuning lambda6-85 towards downhill folding at its melting temperature.

Feng Liu1, Martin Gruebele.   

Abstract

The five-helix bundle lambda6-85* is a fast two-state folder. Several stabilized mutants have been reported to fold kinetically near-downhill or downhill. These mutants undergo a transition to two-state folding kinetics when heated. It has been suggested that this transition is caused by increased hydrophobicity at higher temperature. Here we investigate two histidine-containing mutants of lambda6-85* to see if a weaker hydrophobic core can extend the temperature range of downhill folding. The very stable lambdaHA is the fastest-folding lambda repressor to date (k(f)(-1) approximately k(obs)(-1)=2.3 micros at 44 degrees C). It folds downhill at low temperature, but transits back to two-state folding at its unfolding midpoint. lambdaHG has a weakened hydrophobic core. It is less stable than some slower folding mutants of lambda6-85*, and it has more exposed hydrophobic surface area in the folded state. This mutant nonetheless folds very rapidly, and has the non-exponential folding kinetics of an incipient downhill folder even at the unfolding midpoint (k(m)(-1) approximately 2 micros, k(a)(-1)=15 micros at 56 degrees C). We also compare the thermodynamic melting transition of lambdaHG with the nominal two-state folding mutant lambdaQG, which has a similar melting temperature. Unlike lambdaQG, lambdaHG yields fluorescence wavelength-dependent cooperativities and probe-dependent melting temperatures. This result combined with previous work shows that the energy landscapes of lambda repressor mutants support all standard folding mechanisms.

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Year:  2007        PMID: 17532338     DOI: 10.1016/j.jmb.2007.04.036

Source DB:  PubMed          Journal:  J Mol Biol        ISSN: 0022-2836            Impact factor:   5.469


  35 in total

1.  Protein folded states are kinetic hubs.

Authors:  Gregory R Bowman; Vijay S Pande
Journal:  Proc Natl Acad Sci U S A       Date:  2010-06-01       Impact factor: 11.205

2.  A natural missing link between activated and downhill protein folding scenarios.

Authors:  Feng Liu; Caroline Maynard; Gregory Scott; Artem Melnykov; Kathleen B Hall; Martin Gruebele
Journal:  Phys Chem Chem Phys       Date:  2010-02-11       Impact factor: 3.676

Review 3.  Repeat-protein folding: new insights into origins of cooperativity, stability, and topology.

Authors:  Ellen Kloss; Naomi Courtemanche; Doug Barrick
Journal:  Arch Biochem Biophys       Date:  2007-09-15       Impact factor: 4.013

4.  An experimental survey of the transition between two-state and downhill protein folding scenarios.

Authors:  Feng Liu; Deguo Du; Amelia A Fuller; Jennifer E Davoren; Peter Wipf; Jeffery W Kelly; Martin Gruebele
Journal:  Proc Natl Acad Sci U S A       Date:  2008-02-11       Impact factor: 11.205

5.  Folding domain B of protein A on a dynamically partitioned free energy landscape.

Authors:  Erik D Nelson; Nick V Grishin
Journal:  Proc Natl Acad Sci U S A       Date:  2008-01-29       Impact factor: 11.205

6.  Origins of barriers and barrierless folding in BBL.

Authors:  Samuel S Cho; Patrick Weinkam; Peter G Wolynes
Journal:  Proc Natl Acad Sci U S A       Date:  2008-01-02       Impact factor: 11.205

7.  Exploiting the downhill folding regime via experiment.

Authors:  Victor Muñoz; Mourad Sadqi; Athi N Naganathan; David de Sancho
Journal:  HFSP J       Date:  2008-10-13

8.  A one-dimensional free energy surface does not account for two-probe folding kinetics of protein alpha(3)D.

Authors:  Feng Liu; Charles Dumont; Yongjin Zhu; William F DeGrado; Feng Gai; Martin Gruebele
Journal:  J Chem Phys       Date:  2009-02-14       Impact factor: 3.488

9.  Force field bias in protein folding simulations.

Authors:  Peter L Freddolino; Sanghyun Park; Benoît Roux; Klaus Schulten
Journal:  Biophys J       Date:  2009-05-06       Impact factor: 4.033

10.  Probing the origins of two-state folding.

Authors:  Thomas J Lane; Christian R Schwantes; Kyle A Beauchamp; Vijay S Pande
Journal:  J Chem Phys       Date:  2013-10-14       Impact factor: 3.488

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