Literature DB >> 19728110

Time-shared HSQC-NOESY for accurate distance constraints measured at high-field in (15)N-(13)C-ILV methyl labeled proteins.

Dominique P Frueh1, Alison Leed, Haribabu Arthanari, Alexander Koglin, Christopher T Walsh, Gerhard Wagner.   

Abstract

We present a time-shared 3D HSQC-NOESY experiment that enables one to simultaneously record (13)C- and (15)N-dispersed spectra in Ile, Leu and Val (ILV) methyl-labeled samples. This experiment is designed to delineate the two spectra which would otherwise overlap with one another when acquired together. These spectra display nOe correlations in the detected proton dimension, i.e. with maximum resolution. This is in contrast to NOESY-HSQC types of experiments that provide cross-peaks in the indirect dimension with low resolution due to limits in experimental time. The technique is particularly advantageous at high field where even longer experimental times would be required for comparable resolution in NOESY-HSQC experiments. The method is demonstrated at 900 MHz and at 750 MHz on 37 and 31 kDa proteins, respectively. The resolution and time saving provided in this experiment was crucial for solving the structures of these two proteins.

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Year:  2009        PMID: 19728110      PMCID: PMC2778061          DOI: 10.1007/s10858-009-9372-5

Source DB:  PubMed          Journal:  J Biomol NMR        ISSN: 0925-2738            Impact factor:   2.835


  22 in total

1.  Accelerated acquisition of high resolution triple-resonance spectra using non-uniform sampling and maximum entropy reconstruction.

Authors:  David Rovnyak; Dominique P Frueh; Mallika Sastry; Zhen-Yu J Sun; Alan S Stern; Jeffrey C Hoch; Gerhard Wagner
Journal:  J Magn Reson       Date:  2004-09       Impact factor: 2.229

2.  Unambiguous assignment of NMR protein backbone signals with a time-shared triple-resonance experiment.

Authors:  Dominique P Frueh; Haribabu Arthanari; Gerhard Wagner
Journal:  J Biomol NMR       Date:  2005-11       Impact factor: 2.835

3.  An optimized 3D NOESY-HSQC.

Authors:  S Talluri; G Wagner
Journal:  J Magn Reson B       Date:  1996-08

4.  A simultaneous (15)N, (1)H- and (13)C, (1)H-HSQC with sensitivity enhancement and a heteronuclear gradient echo.

Authors:  M Sattler; M Maurer; J Schleucher; C Griesinger
Journal:  J Biomol NMR       Date:  1995-01       Impact factor: 2.835

5.  Application of nonlinear sampling schemes to COSY-type spectra.

Authors:  P Schmieder; A S Stern; G Wagner; J C Hoch
Journal:  J Biomol NMR       Date:  1993-09       Impact factor: 2.835

6.  NMRPipe: a multidimensional spectral processing system based on UNIX pipes.

Authors:  F Delaglio; S Grzesiek; G W Vuister; G Zhu; J Pfeifer; A Bax
Journal:  J Biomol NMR       Date:  1995-11       Impact factor: 2.835

7.  Ultrahigh-resolution (1)H-(13)C HSQC spectra of metabolite mixtures using nonlinear sampling and forward maximum entropy reconstruction.

Authors:  Sven G Hyberts; Gregory J Heffron; Nestor G Tarragona; Kirty Solanky; Katherine A Edmonds; Harry Luithardt; Jasna Fejzo; Michael Chorev; Huseyin Aktas; Kimberly Colson; Kenneth H Falchuk; Jose A Halperin; Gerhard Wagner
Journal:  J Am Chem Soc       Date:  2007-03-28       Impact factor: 15.419

8.  Conformational switches modulate protein interactions in peptide antibiotic synthetases.

Authors:  Alexander Koglin; Mohammad R Mofid; Frank Löhr; Birgit Schäfer; Vladimir V Rogov; Marc-Michael Blum; Tanja Mittag; Mohamed A Marahiel; Frank Bernhard; Volker Dötsch
Journal:  Science       Date:  2006-04-14       Impact factor: 47.728

9.  FM reconstruction of non-uniformly sampled protein NMR data at higher dimensions and optimization by distillation.

Authors:  Sven G Hyberts; Dominique P Frueh; Haribabu Arthanari; Gerhard Wagner
Journal:  J Biomol NMR       Date:  2009-08-25       Impact factor: 2.835

10.  Gradient-tailored excitation for single-quantum NMR spectroscopy of aqueous solutions.

Authors:  M Piotto; V Saudek; V Sklenár
Journal:  J Biomol NMR       Date:  1992-11       Impact factor: 2.835

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  7 in total

1.  A suite of pulse sequences based on multiple sequential acquisitions at one and two radiofrequency channels for solid-state magic-angle spinning NMR studies of proteins.

Authors:  Kshama Sharma; Perunthiruthy K Madhu; Kaustubh R Mote
Journal:  J Biomol NMR       Date:  2016-06-30       Impact factor: 2.835

2.  NMR: an essential structural tool for integrative studies of T cell development, pMHC ligand recognition and TCR mechanobiology.

Authors:  Robert J Mallis; Kristine N Brazin; Jonathan S Duke-Cohan; Wonmuk Hwang; Jia-Huai Wang; Gerhard Wagner; Haribabu Arthanari; Matthew J Lang; Ellis L Reinherz
Journal:  J Biomol NMR       Date:  2019-02-27       Impact factor: 2.835

3.  UTOPIA NMR: activating unexploited magnetization using interleaved low-gamma detection.

Authors:  Aldino Viegas; Thibault Viennet; Tsyr-Yan Yu; Frank Schumann; Wolfgang Bermel; Gerhard Wagner; Manuel Etzkorn
Journal:  J Biomol NMR       Date:  2016-01-04       Impact factor: 2.835

Review 4.  NMR methods for structural studies of large monomeric and multimeric proteins.

Authors:  Dominique P Frueh; Andrew C Goodrich; Subrata H Mishra; Scott R Nichols
Journal:  Curr Opin Struct Biol       Date:  2013-07-11       Impact factor: 6.809

5.  Structure of a herpesvirus nuclear egress complex subunit reveals an interaction groove that is essential for viral replication.

Authors:  Kendra E Leigh; Mayuri Sharma; My Sam Mansueto; Andras Boeszoermenyi; David J Filman; James M Hogle; Gerhard Wagner; Donald M Coen; Haribabu Arthanari
Journal:  Proc Natl Acad Sci U S A       Date:  2015-07-06       Impact factor: 11.205

Review 6.  Practical aspects of NMR signal assignment in larger and challenging proteins.

Authors:  Dominique P Frueh
Journal:  Prog Nucl Magn Reson Spectrosc       Date:  2013-12-15       Impact factor: 9.795

7.  The molecular basis of FimT-mediated DNA uptake during bacterial natural transformation.

Authors:  Stefanie Holz; Matthew J M Stedman; Sebastian A G Braus; Francesca L Short; Alvar D Gossert; Manuela K Hospenthal
Journal:  Nat Commun       Date:  2022-03-04       Impact factor: 17.694

  7 in total

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