Literature DB >> 27364976

A suite of pulse sequences based on multiple sequential acquisitions at one and two radiofrequency channels for solid-state magic-angle spinning NMR studies of proteins.

Kshama Sharma1, Perunthiruthy K Madhu2,3, Kaustubh R Mote4.   

Abstract

One of the fundamental challenges in the application of solid-state NMR is its limited sensitivity, yet a majority of experiments do not make efficient use of the limited polarization available. The loss in polarization in a single acquisition experiment is mandated by the need to select out a single coherence pathway. In contrast, sequential acquisition strategies can encode more than one pathway in the same experiment or recover unused polarization to supplement a standard experiment. In this article, we present pulse sequences that implement sequential acquisition strategies on one and two radiofrequency channels with a combination of proton and carbon detection to record multiple experiments under magic-angle spinning. We show that complementary 2D experiments such as [Formula: see text] and [Formula: see text] or DARR and [Formula: see text], and 3D experiments such as [Formula: see text] and [Formula: see text], or [Formula: see text] and [Formula: see text]  can be combined in a single experiment to ensure time savings of at least 40 %. These experiments can be done under fast or slow-moderate magic-angle spinning frequencies aided by windowed [Formula: see text] acquisition and homonulcear decoupling. The pulse sequence suite is further expanded by including pathways that allow the recovery of residual polarization, the so-called 'afterglow' pathways, to encode a number of pulse sequences to aid in assignments and chemical-shift mapping.

Entities:  

Keywords:  Magic-angle spinning solid-state NMR; Multiple receivers; Multiple sequential acquisition; Proton detection

Mesh:

Substances:

Year:  2016        PMID: 27364976     DOI: 10.1007/s10858-016-0043-z

Source DB:  PubMed          Journal:  J Biomol NMR        ISSN: 0925-2738            Impact factor:   2.835


  59 in total

1.  Proton-detected solid-state NMR spectroscopy of fully protonated proteins at slow to moderate magic-angle spinning frequencies.

Authors:  Kaustubh R Mote; Perunthiruthy K Madhu
Journal:  J Magn Reson       Date:  2015-11-09       Impact factor: 2.229

2.  Solid-state protein-structure determination with proton-detected triple-resonance 3D magic-angle-spinning NMR spectroscopy.

Authors:  Donghua H Zhou; John J Shea; Andrew J Nieuwkoop; W Trent Franks; Benjamin J Wylie; Charles Mullen; Dennis Sandoz; Chad M Rienstra
Journal:  Angew Chem Int Ed Engl       Date:  2007       Impact factor: 15.336

3.  De novo 3D structure determination from sub-milligram protein samples by solid-state 100 kHz MAS NMR spectroscopy.

Authors:  Vipin Agarwal; Susanne Penzel; Kathrin Szekely; Riccardo Cadalbert; Emilie Testori; Andres Oss; Jaan Past; Ago Samoson; Matthias Ernst; Anja Böckmann; Beat H Meier
Journal:  Angew Chem Int Ed Engl       Date:  2014-09-15       Impact factor: 15.336

4.  NMRPipe: a multidimensional spectral processing system based on UNIX pipes.

Authors:  F Delaglio; S Grzesiek; G W Vuister; G Zhu; J Pfeifer; A Bax
Journal:  J Biomol NMR       Date:  1995-11       Impact factor: 2.835

5.  UTOPIA NMR: activating unexploited magnetization using interleaved low-gamma detection.

Authors:  Aldino Viegas; Thibault Viennet; Tsyr-Yan Yu; Frank Schumann; Wolfgang Bermel; Gerhard Wagner; Manuel Etzkorn
Journal:  J Biomol NMR       Date:  2016-01-04       Impact factor: 2.835

6.  Site-Resolved Backbone and Side-Chain Intermediate Dynamics in a Carbohydrate-Binding Module Protein Studied by Magic-Angle Spinning NMR Spectroscopy.

Authors:  Hadar Ivanir-Dabora; Evgeny Nimerovsky; P K Madhu; Amir Goldbourt
Journal:  Chemistry       Date:  2015-06-12       Impact factor: 5.236

7.  Molecular structure of β-amyloid fibrils in Alzheimer's disease brain tissue.

Authors:  Jun-Xia Lu; Wei Qiang; Wai-Ming Yau; Charles D Schwieters; Stephen C Meredith; Robert Tycko
Journal:  Cell       Date:  2013-09-12       Impact factor: 41.582

8.  High resolution structural characterization of Aβ42 amyloid fibrils by magic angle spinning NMR.

Authors:  Michael T Colvin; Robert Silvers; Birgitta Frohm; Yongchao Su; Sara Linse; Robert G Griffin
Journal:  J Am Chem Soc       Date:  2015-06-04       Impact factor: 15.419

9.  Intrinsic conformational plasticity of native EmrE provides a pathway for multidrug resistance.

Authors:  Min-Kyu Cho; Anindita Gayen; James R Banigan; Maureen Leninger; Nathaniel J Traaseth
Journal:  J Am Chem Soc       Date:  2014-05-23       Impact factor: 15.419

10.  Direct observation of the three regions in α-synuclein that determine its membrane-bound behaviour.

Authors:  Giuliana Fusco; Alfonso De Simone; Tata Gopinath; Vitaly Vostrikov; Michele Vendruscolo; Christopher M Dobson; Gianluigi Veglia
Journal:  Nat Commun       Date:  2014-05-29       Impact factor: 14.919

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  6 in total

1.  Hybridization of TEDOR and NCX MAS solid-state NMR experiments for simultaneous acquisition of heteronuclear correlation spectra and distance measurements.

Authors:  T Gopinath; Songlin Wang; John Lee; Hideki Aihara; Gianluigi Veglia
Journal:  J Biomol NMR       Date:  2019-02-25       Impact factor: 2.835

2.  Taking Simultaneous Snapshots of Intrinsically Disordered Proteins in Action.

Authors:  Marco Schiavina; Maria Grazia Murrali; Letizia Pontoriero; Valerio Sainati; Rainer Kümmerle; Wolfgang Bermel; Roberta Pierattelli; Isabella C Felli
Journal:  Biophys J       Date:  2019-05-23       Impact factor: 4.033

3.  1H-detected MAS solid-state NMR experiments enable the simultaneous mapping of rigid and dynamic domains of membrane proteins.

Authors:  T Gopinath; Sarah E D Nelson; Gianluigi Veglia
Journal:  J Magn Reson       Date:  2017-12       Impact factor: 2.229

Review 4.  1H-Detected Biomolecular NMR under Fast Magic-Angle Spinning.

Authors:  Tanguy Le Marchand; Tobias Schubeis; Marta Bonaccorsi; Piotr Paluch; Daniela Lalli; Andrew J Pell; Loren B Andreas; Kristaps Jaudzems; Jan Stanek; Guido Pintacuda
Journal:  Chem Rev       Date:  2022-05-10       Impact factor: 72.087

5.  Proton-detected polarization optimized experiments (POE) using ultrafast magic angle spinning solid-state NMR: Multi-acquisition of membrane protein spectra.

Authors:  T Gopinath; Gianluigi Veglia
Journal:  J Magn Reson       Date:  2019-11-28       Impact factor: 2.229

6.  Multi-receiver solid-state NMR using polarization optimized experiments (POE) at ultrafast magic angle spinning.

Authors:  T Gopinath; Daniel K Weber; Gianluigi Veglia
Journal:  J Biomol NMR       Date:  2020-04-24       Impact factor: 2.835

  6 in total

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