Literature DB >> 17251159

Biology by design: reduction and synthesis of cellular components and behaviour.

Philippe Marguet1, Frederick Balagadde, Cheemeng Tan, Lingchong You.   

Abstract

Biological research is experiencing an increasing focus on the application of knowledge rather than on its generation. Thanks to the increased understanding of cellular systems and technological advances, biologists are more frequently asking not only 'how can I understand the structure and behaviour of this biological system?', but also 'how can I apply that knowledge to generate novel functions in different biological systems or in other contexts?' Active pursuit of the latter has nurtured the emergence of synthetic biology. Here, we discuss the motivation behind, and foundational technologies enabling, the development of this nascent field. We examine some early successes and applications while highlighting the challenges involved. Finally, we consider future directions and mention non-scientific considerations that can influence the field's growth.

Mesh:

Year:  2007        PMID: 17251159      PMCID: PMC2373384          DOI: 10.1098/rsif.2006.0206

Source DB:  PubMed          Journal:  J R Soc Interface        ISSN: 1742-5662            Impact factor:   4.118


  126 in total

1.  Synthetic biology: engineering Escherichia coli to see light.

Authors:  Anselm Levskaya; Aaron A Chevalier; Jeffrey J Tabor; Zachary Booth Simpson; Laura A Lavery; Matthew Levy; Eric A Davidson; Alexander Scouras; Andrew D Ellington; Edward M Marcotte; Christopher A Voigt
Journal:  Nature       Date:  2005-11-24       Impact factor: 49.962

2.  A synthetic multicellular system for programmed pattern formation.

Authors:  Subhayu Basu; Yoram Gerchman; Cynthia H Collins; Frances H Arnold; Ron Weiss
Journal:  Nature       Date:  2005-04-28       Impact factor: 49.962

3.  Computational thermostabilization of an enzyme.

Authors:  Aaron Korkegian; Margaret E Black; David Baker; Barry L Stoddard
Journal:  Science       Date:  2005-05-06       Impact factor: 47.728

4.  Long-term monitoring of bacteria undergoing programmed population control in a microchemostat.

Authors:  Frederick K Balagaddé; Lingchong You; Carl L Hansen; Frances H Arnold; Stephen R Quake
Journal:  Science       Date:  2005-07-01       Impact factor: 47.728

Review 5.  A giant step towards artificial life?

Authors:  David Deamer
Journal:  Trends Biotechnol       Date:  2005-07       Impact factor: 19.536

6.  A microfluidic chemostat for experiments with bacterial and yeast cells.

Authors:  Alex Groisman; Caroline Lobo; HoJung Cho; J Kyle Campbell; Yann S Dufour; Ann M Stevens; Andre Levchenko
Journal:  Nat Methods       Date:  2005-09       Impact factor: 28.547

7.  Highly efficient endogenous human gene correction using designed zinc-finger nucleases.

Authors:  Fyodor D Urnov; Jeffrey C Miller; Ya-Li Lee; Christian M Beausejour; Jeremy M Rock; Sheldon Augustus; Andrew C Jamieson; Matthew H Porteus; Philip D Gregory; Michael C Holmes
Journal:  Nature       Date:  2005-04-03       Impact factor: 49.962

8.  Hysteresis in a synthetic mammalian gene network.

Authors:  Beat P Kramer; Martin Fussenegger
Journal:  Proc Natl Acad Sci U S A       Date:  2005-06-22       Impact factor: 11.205

9.  Evolutionary engineering of mixed-sugar utilization by a xylose-fermenting Saccharomyces cerevisiae strain.

Authors:  Marko Kuyper; Maurice J Toirkens; Jasper A Diderich; Aaron A Winkler; Johannes P van Dijken; Jack T Pronk
Journal:  FEMS Yeast Res       Date:  2005-07       Impact factor: 2.796

10.  A synthetic gene-metabolic oscillator.

Authors:  Eileen Fung; Wilson W Wong; Jason K Suen; Thomas Bulter; Sun-gu Lee; James C Liao
Journal:  Nature       Date:  2005-05-05       Impact factor: 49.962

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  21 in total

1.  Computational model for monitoring cholesterol metabolism.

Authors:  R Selvakumar; M Rashith Muhammad; G Poornima Devi
Journal:  Syst Synth Biol       Date:  2014-08-01

2.  Rate and extent of protein localization is controlled by peptide-binding domain association kinetics and morphology.

Authors:  Evan Mills; Kevin Truong
Journal:  Protein Sci       Date:  2009-06       Impact factor: 6.725

3.  Towards programming languages for genetic engineering of living cells.

Authors:  Michael Pedersen; Andrew Phillips
Journal:  J R Soc Interface       Date:  2009-04-15       Impact factor: 4.118

4.  Microbial synthetic biology for human therapeutics.

Authors:  Aastha Jain; Pooja Bhatia; Archana Chugh
Journal:  Syst Synth Biol       Date:  2012-06-02

Review 5.  The challenges of informatics in synthetic biology: from biomolecular networks to artificial organisms.

Authors:  Gil Alterovitz; Taro Muso; Marco F Ramoni
Journal:  Brief Bioinform       Date:  2009-11-11       Impact factor: 11.622

Review 6.  Programming microbial population dynamics by engineered cell-cell communication.

Authors:  Hao Song; Stephen Payne; Cheemeng Tan; Lingchong You
Journal:  Biotechnol J       Date:  2011-06-16       Impact factor: 4.677

7.  How to turn a genetic circuit into a synthetic tunable oscillator, or a bistable switch.

Authors:  Lucia Marucci; David A W Barton; Irene Cantone; Maria Aurelia Ricci; Maria Pia Cosma; Stefania Santini; Diego di Bernardo; Mario di Bernardo
Journal:  PLoS One       Date:  2009-12-07       Impact factor: 3.240

8.  An environment-sensitive synthetic microbial ecosystem.

Authors:  Bo Hu; Jin Du; Rui-yang Zou; Ying-jin Yuan
Journal:  PLoS One       Date:  2010-05-12       Impact factor: 3.240

9.  Diversity-based, model-guided construction of synthetic gene networks with predicted functions.

Authors:  Tom Ellis; Xiao Wang; James J Collins
Journal:  Nat Biotechnol       Date:  2009-04-19       Impact factor: 54.908

10.  Gemini, a bifunctional enzymatic and fluorescent reporter of gene expression.

Authors:  Lance Martin; Austin Che; Drew Endy
Journal:  PLoS One       Date:  2009-11-04       Impact factor: 3.240

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