Literature DB >> 19704000

Cwc25 is a novel splicing factor required after Prp2 and Yju2 to facilitate the first catalytic reaction.

Ying-Fang Chiu1, Yen-Chi Liu, Ting-Wei Chiang, Tzu-Chi Yeh, Chi-Kang Tseng, Nan-Ying Wu, Soo-Chen Cheng.   

Abstract

Cwc25 has previously been identified to associate with pre-mRNA splicing factor Cef1/Ntc85, a component of the Prp19-associated complex (nineteen complex, or NTC) involved in spliceosome activation. We show here that Cwc25 is neither tightly associated with NTC nor required for spliceosome activation but is required for the first catalytic reaction. The affinity-purified spliceosome formed in Cwc25-depleted extracts contained only pre-mRNA and could be chased into splicing intermediates upon the addition of recombinant Cwc25 in an ATP-independent manner, suggesting that Cwc25 functions in the final step of the first catalytic reaction after the action of Prp2. Yju2 and a heat-resistant factor of unknown identity, HP, have previously been shown to be required for the same step of the splicing pathway. Cwc25, although resistant to heat treatment, is not sufficient to replace the function of HP, indicating that another heat-resistant factor, which we named HP-X, is involved. The requirement of Cwc25 and HP-X for the first catalytic reaction could be partially compensated for when the affinity-purified spliceosome was incubated in the presence of low concentrations of Mn(2+). These results have implications for the possible roles of Cwc25 and HP-X in facilitating juxtaposition of the 5' splice site and the branch point during the first catalytic reaction.

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Year:  2009        PMID: 19704000      PMCID: PMC2772750          DOI: 10.1128/MCB.00773-09

Source DB:  PubMed          Journal:  Mol Cell Biol        ISSN: 0270-7306            Impact factor:   4.272


  36 in total

1.  Functional and physical interactions between components of the Prp19p-associated complex.

Authors:  Chun-Hong Chen; Wan-Chin Yu; Twee Y Tsao; Lian-Yung Wang; Hau-Ren Chen; Jui-Yen Lin; Wei-Yü Tsai; Soo-Chen Cheng
Journal:  Nucleic Acids Res       Date:  2002-02-15       Impact factor: 16.971

2.  The Prp19-associated complex is required for specifying interactions of U5 and U6 with pre-mRNA during spliceosome activation.

Authors:  Shih-Peng Chan; Soo-Chen Cheng
Journal:  J Biol Chem       Date:  2005-06-30       Impact factor: 5.157

3.  The yeast PRP19 protein is not tightly associated with small nuclear RNAs, but appears to associate with the spliceosome after binding of U2 to the pre-mRNA and prior to formation of the functional spliceosome.

Authors:  W Y Tarn; K R Lee; S C Cheng
Journal:  Mol Cell Biol       Date:  1993-03       Impact factor: 4.272

4.  Identification and characterization of two novel components of the Prp19p-associated complex, Ntc30p and Ntc20p.

Authors:  C H Chen; W Y Tsai; H R Chen; C H Wang; S C Cheng
Journal:  J Biol Chem       Date:  2001-01-05       Impact factor: 5.157

5.  Synthetic lethal mutations suggest interactions between U5 small nuclear RNA and four proteins required for the second step of splicing.

Authors:  D Frank; B Patterson; C Guthrie
Journal:  Mol Cell Biol       Date:  1992-11       Impact factor: 4.272

6.  A U5 small nuclear ribonucleoprotein particle protein involved only in the second step of pre-mRNA splicing in Saccharomyces cerevisiae.

Authors:  D S Horowitz; J Abelson
Journal:  Mol Cell Biol       Date:  1993-05       Impact factor: 4.272

7.  Characterization and functional ordering of Slu7p and Prp17p during the second step of pre-mRNA splicing in yeast.

Authors:  M H Jones; D N Frank; C Guthrie
Journal:  Proc Natl Acad Sci U S A       Date:  1995-10-10       Impact factor: 11.205

8.  The final stages of spliceosome maturation require Spp2p that can interact with the DEAH box protein Prp2p and promote step 1 of splicing.

Authors:  J Roy; K Kim; J R Maddock; J G Anthony; J L Woolford
Journal:  RNA       Date:  1995-06       Impact factor: 4.942

9.  A conformational rearrangement in the spliceosome is dependent on PRP16 and ATP hydrolysis.

Authors:  B Schwer; C Guthrie
Journal:  EMBO J       Date:  1992-12       Impact factor: 11.598

10.  A dominant negative mutation in the conserved RNA helicase motif 'SAT' causes splicing factor PRP2 to stall in spliceosomes.

Authors:  M Plumpton; M McGarvey; J D Beggs
Journal:  EMBO J       Date:  1994-02-15       Impact factor: 11.598

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  44 in total

1.  Prp2-mediated protein rearrangements at the catalytic core of the spliceosome as revealed by dcFCCS.

Authors:  Thomas Ohrt; Mira Prior; Julia Dannenberg; Peter Odenwälder; Olexandr Dybkov; Nicolas Rasche; Jana Schmitzová; Ingo Gregor; Patrizia Fabrizio; Jörg Enderlein; Reinhard Lührmann
Journal:  RNA       Date:  2012-04-25       Impact factor: 4.942

2.  DEAH-box ATPase Prp16 has dual roles in remodeling of the spliceosome in catalytic steps.

Authors:  Chi-Kang Tseng; Hsueh-Lien Liu; Soo-Chen Cheng
Journal:  RNA       Date:  2010-11-22       Impact factor: 4.942

3.  Release of SF3 from the intron branchpoint activates the first step of pre-mRNA splicing.

Authors:  Rea M Lardelli; James X Thompson; John R Yates; Scott W Stevens
Journal:  RNA       Date:  2010-01-20       Impact factor: 4.942

4.  Reconstitution of both steps of Saccharomyces cerevisiae splicing with purified spliceosomal components.

Authors:  Zbigniew Warkocki; Peter Odenwälder; Jana Schmitzová; Florian Platzmann; Holger Stark; Henning Urlaub; Ralf Ficner; Patrizia Fabrizio; Reinhard Lührmann
Journal:  Nat Struct Mol Biol       Date:  2009-11-22       Impact factor: 15.369

5.  The splice is right: guarantors of fidelity in pre-mRNA splicing.

Authors:  David S Horowitz
Journal:  RNA       Date:  2011-02-28       Impact factor: 4.942

Review 6.  Spliceosome structure and function.

Authors:  Cindy L Will; Reinhard Lührmann
Journal:  Cold Spring Harb Perspect Biol       Date:  2011-07-01       Impact factor: 10.005

7.  A weak spliceosome-binding domain of Yju2 functions in the first step and bypasses Prp16 in the second step of splicing.

Authors:  Ting-Wei Chiang; Soo-Chen Cheng
Journal:  Mol Cell Biol       Date:  2013-02-25       Impact factor: 4.272

8.  A close-up look at the spliceosome, at last.

Authors:  John Abelson
Journal:  Proc Natl Acad Sci U S A       Date:  2017-04-13       Impact factor: 11.205

Review 9.  Molecular Mechanisms of pre-mRNA Splicing through Structural Biology of the Spliceosome.

Authors:  Chuangye Yan; Ruixue Wan; Yigong Shi
Journal:  Cold Spring Harb Perspect Biol       Date:  2019-01-02       Impact factor: 10.005

Review 10.  Lights, camera, action! Capturing the spliceosome and pre-mRNA splicing with single-molecule fluorescence microscopy.

Authors:  Alexander C DeHaven; Ian S Norden; Aaron A Hoskins
Journal:  Wiley Interdiscip Rev RNA       Date:  2016-05-20       Impact factor: 9.957

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