Literature DB >> 28408394

A close-up look at the spliceosome, at last.

John Abelson1.   

Abstract

Major developments in cryo-electron microscopy in the past three or four years have led to the solution of a number of spliceosome structures at high resolution, e.g., the fully assembled but not yet active spliceosome (Bact), the spliceosome just after the first step of splicing (C), and the spliceosome activated for the second step (C*). Therefore 30 years of genetics and biochemistry of the spliceosome can now be interpreted at the structural level. I have closely examined the RNase H domain of Prp8 in each of the structures. Interestingly, the RNase H domain has different and unexpected roles in each of the catalytic steps of splicing.

Entities:  

Keywords:  Prp8; RNase H; cryo-electron microscopy; pre-mRNA splicing; spliceosome

Mesh:

Substances:

Year:  2017        PMID: 28408394      PMCID: PMC5410838          DOI: 10.1073/pnas.1700390114

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  36 in total

1.  Opposing classes of prp8 alleles modulate the transition between the catalytic steps of pre-mRNA splicing.

Authors:  Li Liu; Charles C Query; Maria M Konarska
Journal:  Nat Struct Mol Biol       Date:  2007-05-07       Impact factor: 15.369

Review 2.  The spliceosome: design principles of a dynamic RNP machine.

Authors:  Markus C Wahl; Cindy L Will; Reinhard Lührmann
Journal:  Cell       Date:  2009-02-20       Impact factor: 41.582

3.  Crystal structure of the beta-finger domain of Prp8 reveals analogy to ribosomal proteins.

Authors:  Kui Yang; Lingdi Zhang; Tao Xu; Annie Heroux; Rui Zhao
Journal:  Proc Natl Acad Sci U S A       Date:  2008-09-08       Impact factor: 11.205

4.  A weak spliceosome-binding domain of Yju2 functions in the first step and bypasses Prp16 in the second step of splicing.

Authors:  Ting-Wei Chiang; Soo-Chen Cheng
Journal:  Mol Cell Biol       Date:  2013-02-25       Impact factor: 4.272

5.  Structure of a yeast step II catalytically activated spliceosome.

Authors:  Chuangye Yan; Ruixue Wan; Rui Bai; Gaoxingyu Huang; Yigong Shi
Journal:  Science       Date:  2016-12-15       Impact factor: 47.728

6.  U2 toggles iteratively between the stem IIa and stem IIc conformations to promote pre-mRNA splicing.

Authors:  Angela K Hilliker; Melissa A Mefford; Jonathan P Staley
Journal:  Genes Dev       Date:  2007-04-01       Impact factor: 11.361

7.  Electron counting and beam-induced motion correction enable near-atomic-resolution single-particle cryo-EM.

Authors:  Xueming Li; Paul Mooney; Shawn Zheng; Christopher R Booth; Michael B Braunfeld; Sander Gubbens; David A Agard; Yifan Cheng
Journal:  Nat Methods       Date:  2013-05-05       Impact factor: 28.547

8.  Biased Brownian ratcheting leads to pre-mRNA remodeling and capture prior to first-step splicing.

Authors:  Ramya Krishnan; Mario R Blanco; Matthew L Kahlscheuer; John Abelson; Christine Guthrie; Nils G Walter
Journal:  Nat Struct Mol Biol       Date:  2013-11-17       Impact factor: 18.361

9.  Structure of promoter-bound TFIID and model of human pre-initiation complex assembly.

Authors:  Robert K Louder; Yuan He; José Ramón López-Blanco; Jie Fang; Pablo Chacón; Eva Nogales
Journal:  Nature       Date:  2016-03-23       Impact factor: 49.962

10.  Cryo-EM structure of the spliceosome immediately after branching.

Authors:  Wojciech P Galej; Max E Wilkinson; Sebastian M Fica; Chris Oubridge; Andrew J Newman; Kiyoshi Nagai
Journal:  Nature       Date:  2016-07-26       Impact factor: 49.962

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  4 in total

1.  Structural and functional analyses of the spliceosome requires a multi-disciplinary approach.

Authors:  Melanie D Ohi
Journal:  Methods       Date:  2017-08-01       Impact factor: 3.608

2.  The Myc-associated zinc finger protein (MAZ) works together with CTCF to control cohesin positioning and genome organization.

Authors:  Tiaojiang Xiao; Xin Li; Gary Felsenfeld
Journal:  Proc Natl Acad Sci U S A       Date:  2021-02-16       Impact factor: 11.205

3.  Saccharomyces cerevisiae Ecm2 Modulates the Catalytic Steps of pre-mRNA Splicing.

Authors:  Clarisse van der Feltz; Brandon Nikolai; Charles Schneider; Joshua C Paulson; Xingyang Fu; Aaron A Hoskins
Journal:  RNA       Date:  2021-02-05       Impact factor: 4.942

4.  Dynamic protein-RNA interactions in mediating splicing catalysis.

Authors:  Che-Sheng Chung; Chi-Kang Tseng; Yung-Hua Lai; Hui-Fang Wang; Andrew J Newman; Soo-Chen Cheng
Journal:  Nucleic Acids Res       Date:  2019-01-25       Impact factor: 16.971

  4 in total

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