Literature DB >> 27198613

Lights, camera, action! Capturing the spliceosome and pre-mRNA splicing with single-molecule fluorescence microscopy.

Alexander C DeHaven1,2, Ian S Norden1,2, Aaron A Hoskins2.   

Abstract

The process of removing intronic sequences from a precursor to messenger RNA (pre-mRNA) to yield a mature mRNA transcript via splicing is an integral step in eukaryotic gene expression. Splicing is carried out by a cellular nanomachine called the spliceosome that is composed of RNA components and dozens of proteins. Despite decades of study, many fundamentals of spliceosome function have remained elusive. Recent developments in single-molecule fluorescence microscopy have afforded new tools to better probe the spliceosome and the complex, dynamic process of splicing by direct observation of single molecules. These cutting-edge technologies enable investigators to monitor the dynamics of specific splicing components, whole spliceosomes, and even cotranscriptional splicing within living cells. WIREs RNA 2016, 7:683-701. doi: 10.1002/wrna.1358 For further resources related to this article, please visit the WIREs website.
© 2016 Wiley Periodicals, Inc.

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Year:  2016        PMID: 27198613      PMCID: PMC4990488          DOI: 10.1002/wrna.1358

Source DB:  PubMed          Journal:  Wiley Interdiscip Rev RNA        ISSN: 1757-7004            Impact factor:   9.957


  120 in total

1.  Early organization of pre-mRNA during spliceosome assembly.

Authors:  Oliver A Kent; Andrew M MacMillan
Journal:  Nat Struct Biol       Date:  2002-08

2.  Spatial organization of RNA polymerase II inside a mammalian cell nucleus revealed by reflected light-sheet superresolution microscopy.

Authors:  Ziqing W Zhao; Rahul Roy; J Christof M Gebhardt; David M Suter; Alec R Chapman; X Sunney Xie
Journal:  Proc Natl Acad Sci U S A       Date:  2013-12-30       Impact factor: 11.205

3.  Both catalytic steps of nuclear pre-mRNA splicing are reversible.

Authors:  Chi-Kang Tseng; Soo-Chen Cheng
Journal:  Science       Date:  2008-06-27       Impact factor: 47.728

4.  Continuous throughput and long-term observation of single-molecule FRET without immobilization.

Authors:  Swati Tyagi; Virginia VanDelinder; Niccolò Banterle; Gustavo Fuertes; Sigrid Milles; Morgane Agez; Edward A Lemke
Journal:  Nat Methods       Date:  2014-01-19       Impact factor: 28.547

5.  Molecular architecture of the human U4/U6.U5 tri-snRNP.

Authors:  Dmitry E Agafonov; Berthold Kastner; Olexandr Dybkov; Romina V Hofele; Wen-Ti Liu; Henning Urlaub; Reinhard Lührmann; Holger Stark
Journal:  Science       Date:  2016-02-18       Impact factor: 47.728

6.  Mechanism for Aar2p function as a U5 snRNP assembly factor.

Authors:  Gert Weber; Vanessa F Cristão; Flavia de L Alves; Karine F Santos; Nicole Holton; Juri Rappsilber; Jean D Beggs; Markus C Wahl
Journal:  Genes Dev       Date:  2011-07-15       Impact factor: 11.361

7.  U2 toggles iteratively between the stem IIa and stem IIc conformations to promote pre-mRNA splicing.

Authors:  Angela K Hilliker; Melissa A Mefford; Jonathan P Staley
Journal:  Genes Dev       Date:  2007-04-01       Impact factor: 11.361

8.  Ordered and dynamic assembly of single spliceosomes.

Authors:  Aaron A Hoskins; Larry J Friedman; Sarah S Gallagher; Daniel J Crawford; Eric G Anderson; Richard Wombacher; Nicholas Ramirez; Virginia W Cornish; Jeff Gelles; Melissa J Moore
Journal:  Science       Date:  2011-03-11       Impact factor: 47.728

9.  Probing cellular protein complexes using single-molecule pull-down.

Authors:  Ankur Jain; Ruijie Liu; Biswarathan Ramani; Edwin Arauz; Yuji Ishitsuka; Kaushik Ragunathan; Jeehae Park; Jie Chen; Yang K Xiang; Taekjip Ha
Journal:  Nature       Date:  2011-05-26       Impact factor: 49.962

10.  Spatial mapping of splicing factor complexes involved in exon and intron definition.

Authors:  Jonathan D Ellis; David Llères; Marco Denegri; Angus I Lamond; Javier F Cáceres
Journal:  J Cell Biol       Date:  2008-06-16       Impact factor: 10.539

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  2 in total

Review 1.  Coming Together: RNAs and Proteins Assemble under the Single-Molecule Fluorescence Microscope.

Authors:  Ameya P Jalihal; Paul E Lund; Nils G Walter
Journal:  Cold Spring Harb Perspect Biol       Date:  2019-04-01       Impact factor: 10.005

Review 2.  Splicing Factor Mutations in Myelodysplasias: Insights from Spliceosome Structures.

Authors:  Jermaine L Jenkins; Clara L Kielkopf
Journal:  Trends Genet       Date:  2017-03-31       Impact factor: 11.639

  2 in total

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