Literature DB >> 19683579

Monolithic microfluidic mixing-spraying devices for time-resolved cryo-electron microscopy.

Zonghuan Lu1, Tanvir R Shaikh, David Barnard, Xing Meng, Hisham Mohamed, Aymen Yassin, Carmen A Mannella, Rajendra K Agrawal, Toh-Ming Lu, Terence Wagenknecht.   

Abstract

The goal of time-resolved cryo-electron microscopy is to determine structural models for transient functional states of large macromolecular complexes such as ribosomes and viruses. The challenge of time-resolved cryo-electron microscopy is to rapidly mix reactants, and then, following a defined time interval, to rapidly deposit them as a thin film and freeze the sample to the vitreous state. Here we describe a methodology in which reaction components are mixed and allowed to react, and are then sprayed onto an EM grid as it is being plunged into cryogen. All steps are accomplished by a monolithic, microfabricated silicon device that incorporates a mixer, reaction channel, and pneumatic sprayer in a single chip. We have found that microdroplets produced by air atomization spread to sufficiently thin films on a millisecond time scale provided that the carbon supporting film is made suitably hydrophilic. The device incorporates two T-mixers flowing into a single channel of four butterfly-shaped mixing elements that ensure effective mixing, followed by a microfluidic reaction channel whose length can be varied to achieve the desired reaction time. The reaction channel is flanked by two ports connected to compressed humidified nitrogen gas (at 50 psi) to generate the spray. The monolithic mixer-sprayer is incorporated into a computer-controlled plunging apparatus. To test the mixing performance and the suitability of the device for preparation of biological macromolecules for cryo-EM, ribosomes and ferritin were mixed in the device and sprayed onto grids. Three-dimensional reconstructions of the ribosomes demonstrated retention of native structure, and 30S and 50S subunits were shown to be capable of reassociation into ribosomes after passage through the device.

Entities:  

Mesh:

Year:  2009        PMID: 19683579      PMCID: PMC2783284          DOI: 10.1016/j.jsb.2009.08.004

Source DB:  PubMed          Journal:  J Struct Biol        ISSN: 1047-8477            Impact factor:   2.867


  27 in total

1.  Preparation of functional ribosomal complexes and effect of buffer conditions on tRNA positions observed by cryoelectron microscopy.

Authors:  G Blaha; U Stelzl; C M Spahn; R K Agrawal; J Frank; K H Nierhaus
Journal:  Methods Enzymol       Date:  2000       Impact factor: 1.600

2.  Correlations to predict droplet size in ultrasonic atomisation.

Authors:  R Rajan; A B Pandit
Journal:  Ultrasonics       Date:  2001-06       Impact factor: 2.890

Review 3.  Cryo-electron microscopy as an investigative tool: the ribosome as an example.

Authors:  J Frank
Journal:  Bioessays       Date:  2001-08       Impact factor: 4.345

4.  A second generation apparatus for time-resolved electron cryo-microscopy using stepper motors and electrospray.

Authors:  H D White; K Thirumurugan; M L Walker; J Trinick
Journal:  J Struct Biol       Date:  2003 Oct-Nov       Impact factor: 2.867

5.  A time-resolved investigation of ribosomal subunit association.

Authors:  Scott P Hennelly; Ayman Antoun; Måns Ehrenberg; Claudio O Gualerzi; William Knight; J Stephen Lodmell; Walter E Hill
Journal:  J Mol Biol       Date:  2005-01-16       Impact factor: 5.469

6.  SPIDER image processing for single-particle reconstruction of biological macromolecules from electron micrographs.

Authors:  Tanvir R Shaikh; Haixiao Gao; William T Baxter; Francisco J Asturias; Nicolas Boisset; Ardean Leith; Joachim Frank
Journal:  Nat Protoc       Date:  2008       Impact factor: 13.491

7.  Escherichia coli 70 S ribosome at 15 A resolution by cryo-electron microscopy: localization of fMet-tRNAfMet and fitting of L1 protein.

Authors:  A Malhotra; P Penczek; R K Agrawal; I S Gabashvili; R A Grassucci; R Jünemann; N Burkhardt; K H Nierhaus; J Frank
Journal:  J Mol Biol       Date:  1998-07-03       Impact factor: 5.469

8.  Visualization of elongation factor G on the Escherichia coli 70S ribosome: the mechanism of translocation.

Authors:  R K Agrawal; P Penczek; R A Grassucci; J Frank
Journal:  Proc Natl Acad Sci U S A       Date:  1998-05-26       Impact factor: 11.205

9.  Negative stain electron microscopy of protein macromolecules.

Authors:  R M Oliver
Journal:  Methods Enzymol       Date:  1973       Impact factor: 1.600

10.  Acetylcholine receptor channel imaged in the open state.

Authors:  N Unwin
Journal:  Nature       Date:  1995-01-05       Impact factor: 49.962

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  30 in total

1.  The Ribosome Comes Alive.

Authors:  Joachim Frank
Journal:  Isr J Chem       Date:  2010-06-18       Impact factor: 3.333

Review 2.  Two promising future developments of cryo-EM: capturing short-lived states and mapping a continuum of states of a macromolecule.

Authors:  Bo Chen; Joachim Frank
Journal:  Microscopy (Oxf)       Date:  2015-10-31       Impact factor: 1.571

Review 3.  Challenges and opportunities in cryo-EM single-particle analysis.

Authors:  Dmitry Lyumkis
Journal:  J Biol Chem       Date:  2019-02-25       Impact factor: 5.157

Review 4.  Cryo-EM in drug discovery: achievements, limitations and prospects.

Authors:  Jean-Paul Renaud; Ashwin Chari; Claudio Ciferri; Wen-Ti Liu; Hervé-William Rémigy; Holger Stark; Christian Wiesmann
Journal:  Nat Rev Drug Discov       Date:  2018-06-08       Impact factor: 84.694

5.  Initial bridges between two ribosomal subunits are formed within 9.4 milliseconds, as studied by time-resolved cryo-EM.

Authors:  Tanvir R Shaikh; Aymen S Yassin; Zonghuan Lu; David Barnard; Xing Meng; Toh-Ming Lu; Terence Wagenknecht; Rajendra K Agrawal
Journal:  Proc Natl Acad Sci U S A       Date:  2014-06-23       Impact factor: 11.205

Review 6.  Structure and dynamics of a processive Brownian motor: the translating ribosome.

Authors:  Joachim Frank; Ruben L Gonzalez
Journal:  Annu Rev Biochem       Date:  2010       Impact factor: 23.643

7.  Gas-Assisted Annular Microsprayer for Sample Preparation for Time-Resolved Cryo-Electron Microscopy.

Authors:  Zonghuan Lu; David Barnard; Tanvir R Shaikh; Xing Meng; Carmen A Mannella; Aymen Yassin; Rajendra Agrawal; Terence Wagenknecht; Toh-Ming Lu
Journal:  J Micromech Microeng       Date:  2014-11-01       Impact factor: 1.881

Review 8.  Biological Applications at the Cutting Edge of Cryo-Electron Microscopy.

Authors:  Rebecca S Dillard; Cheri M Hampton; Joshua D Strauss; Zunlong Ke; Deanna Altomara; Ricardo C Guerrero-Ferreira; Gabriella Kiss; Elizabeth R Wright
Journal:  Microsc Microanal       Date:  2018-08       Impact factor: 4.127

9.  Interfacing Microfluidics with Negative Stain Transmission Electron Microscopy.

Authors:  Nikita Mukhitov; John M Spear; Scott M Stagg; Michael G Roper
Journal:  Anal Chem       Date:  2015-12-21       Impact factor: 6.986

10.  Ensemble and single-molecule FRET studies of protein synthesis.

Authors:  Wan-Jung C Lai; Dmitri N Ermolenko
Journal:  Methods       Date:  2017-12-13       Impact factor: 3.608

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